I ran into this error when running Fastsurfer’s recon-surf. Does the error: Cannot allocate memory error: mris_sample_parc: LabelAlloc() could not allocate 0-sized vector, mean I am running out of RAM or that something else went wrong? I think it’s RAM, but wondering if anyone else has any other ideas. Thanks!
writing mean curvature to ./lh.inflated.H...curvature mean = -0.015, std = 0.025
done.
Started at Thu Jul 13 19:47:42 UTC 2023
Ended at Thu Jul 13 19:49:11 UTC 2023
#@#%# recon-all-run-time-hours 0.025
recon-all -s T1w finished without error at Thu Jul 13 19:49:11 UTC 2023
done
@#@FSTIME 2023:07:13:19:47:42 recon-all N 8 e 89.16 S 1.79 U 87.47 P 100% M 386140 F 0 R 894931 W 0 c 457 w 1106 I 0 O 26384 L 1.02 1.04 1.21
@#@FSLOADPOST 2023:07:13:19:49:11 recon-all N 8 1.00 1.03 1.18
=========== Creating surfaces lh - map input asegdkt_segfile to surf ===============
mris_sample_parc -ct /opt/freesurfer/average/colortable_desikan_killiany.txt -file /fastsurfer/recon_surf/lh.DKTatlaslookup.txt -projmm 0.6 -f 5 -surf white.preaparc T1w lh aparc.DKTatlas+aseg.orig.mgz aparc.DKTatlas.mapped.prefix.annot
embedding color table /opt/freesurfer/average/colortable_desikan_killiany.txt into output annot file
using as translation fname
projecting 0.60 mm along surface normal
applying mode filter 5 times to parcellation
using white.preaparc as surface name
reading parcellation volume from /Gear/output/T1w/mri/aparc.DKTatlas+aseg.orig.mgz...
reading input surface /Gear/output/T1w/surf/lh.white.preaparc...
error: Cannot allocate memory
error: mris_sample_parc: LabelAlloc() could not allocate 0-sized vector
Command exited with non-zero status 254
@#@FSTIME 2023:07:13:19:49:11 mris_sample_parc N 14 e 12.35 S 6.83 U 5.45 P 99% M 15473256 F 152 R 3885644 W 0 c 92 w 158 I 30592 O 0 L 1.00 1.03 1.18
@#@FSLOADPOST 2023:07:13:19:49:23 mris_sample_parc N 14 1.00 1.03 1.18
Command exited with non-zero status 1
@#@FSTIME 2023:07:13:19:34:48 /Gear/output/T1w/scripts/lh.processing.cmdf N 0 e 875.95 S 21.56 U 854.53 P 100% M 15473256 F 213 R 11278204 W 0 c 2848 w 5465 I 44688 O 164248 L 1.00 1.26 1.49
@#@FSLOADPOST 2023:07:13:19:49:24 /Gear/output/T1w/scripts/lh.processing.cmdf N 0 1.00 1.03 1.18