Hi,
I tried to use the pypmi to turn the PPMI to BIDS. I tested on 3 subjects using the following code
import pypmi.bids pypmi.bids.convert_ppmi(raw_dir='data/raw/ppmi/dicoms', out_dir='data/raw/ppmi/bids', ignore_bad=True coerce_study_uids=True)
But it cannot work correctly. The output of the code is
INFO: Generated sequence info for 17 studies with 10752 entries total WARNING: Skipping unrecognized series description: 3 PLANE LOC WARNING: Skipping unrecognized series description: MIDLINE SAG LOC WARNING: Skipping unrecognized series description: SAG 3D MPRAGE WARNING: Skipping unrecognized series description: 3D T2 FLAIR_ND WARNING: Skipping unrecognized series description: 3D T2 FLAIR WARNING: Skipping unrecognized series description: RESTING STATE FMRI ep2d_fid_basic_bold WARNING: Skipping unrecognized series description: RESTING STATE FMRI ep2d_fid_basic_bold
I have tested the lastest version of heudiconv docker image. Still the same warning information!
Thanks!