I have tried several times to install the container wrapper for e.g. qsiprep. It seems that the pip installation works, but I then can’t use qsiprep-docker.
pip3 install --user --upgrade qsiprep-container
Requirement already up-to-date: qsiprep-container in /home/quintin_frerichs/.local/lib/python3.8/site-packages (0.12.2)
I get this error:
qsiprep-docker /home/quintin_frerichs/data/ds001590-download
/home/quintin_frerichs/data/qsiprep-output participant --participant_label sub-01
bash: qsiprep-docker: command not found
Docker is also installed (docker --version
Docker version 19.03.15, build 99e3ed8919)