Hi, everyone!
When I am using qsiprep:0.15.3, I got an error like this:
Cannot run qsiprep. Missing dependencies:
fugue (Interface: FUGUE)
fugue (Interface: FUGUE)
prelude (Interface: PRELUDE)
0.15.2 also had this problem to me. But 0.14.3 is fine.
This is my command:
docker run -ti --rm \
-v working-dir/qsiprep-proj/:/data:ro \
-v working-dir/qsiprep-proj/derivatives/:/out \
-v working-dir/qsiprep-proj/working/:/working \
-v working-dir/qsiprep-proj/code/license.txt:/opt/freesurfer/license.txt \
pennbbl/qsiprep:0.15.3 \
/data /out participant \
--participant_label 00000192 \
--unringing-method mrdegibbs \
--fs-license-file /opt/freesurfer/license.txt \
--nthreads 64 \
--omp-nthreads 64 \
--output_resolution 1.2 \
-w /working \
--stop-on-first-crash
And There is no log in my log dir, this is my log dir:
logs/
├── CITATION.html
├── CITATION.md
└── CITATION.tex