1.8.4 docker cpac
Pipeline crashed with the below error indicating too many volumes were censored (298).
However, when I looked at *_motion-params.txt only 124 Movements_gt_threshold (124).
Is this a bug or am I misunderstanding the motion params text file?
Thanks
112666-100_2,func-1,0.102921,0.480883,124.000000,0.022086,0.132130,0.457000,0.638000,0.037800,0.395700,0.154000,0.815500,0.064100,0.426700,0.010196,0.153642,0.035054,0.400024,0.022078,0.225949,0.054500,0.265400,0.127800,0.491600,0.071300,0.278800,0.016357,0.088379,0.022945,0.210999,0.015999,0.119461
RuntimeError: Command:
3dTproject -input /data/proj/app/pipeline/rs/outputs/working/cpac_112666-100_2_ses-1/nuisance_regression_defaultxGSRxcensor_244/_scan_func-1/nuisance_regression/funcf_calc_despike_tshift_resample_0_volreg_tcat_calc_maths.nii.gz -cenmode KILL -censor /data/proj/app/pipeline/rs/outputs/working/cpac_112666-100_2_ses-1/nuisance_regression_defaultxGSRxcensor_244/_scan_func-1/find_offending_time_points/censors.tsv -mask /data/proj/app/pipeline/rs/outputs/working/cpac_112666-100_2_ses-1/_scan_func-1/func_get_brain_mask_AFNI_126/funcf_calc_despike_tshift_resample_0_volreg_tcat_mask.nii.gz -ort /data/proj/app/pipeline/rs/outputs/working/cpac_112666-100_2_ses-1/nuisance_regressors_defaultxGSRxcensor_217/_scan_func-1/build_nuisance_regressors/nuisance_regressors.1D -polort 2 -prefix residuals.nii.gz
Standard output:
Standard error:
++ 3dTproject: AFNI version=AFNI_22.1.13 (Jun 6 2022) [64-bit]
++ Authored by: Cox the Algebraic (Linear)
++ input time points = 300 ; censored = 298 ; remaining = 2
e[7m** FATAL ERROR:e[0m only 2 points left after censoring -- cannot continue (need at least 9)
** Program compile date = Jun 6 2022
Return code: 1