Hi everyone!
Through longitudinal assessments, I aim to evaluate differences between healthy and transgenic 5XFAD mice using magnetic resonance imaging (MRI), behavioral testing, frailty index scoring, and biochemical analyses.
Last year, when I completed my undergraduate thesis, we decided to use manual segmentation of ROIs using a program called 3D Slicer. However, for my Master’s project, I hope to co-register my MRI images (T2 weighed fast spin echo at 60 um) with the Allen Mouse brain atlas and the developmental mouse brain atlas. Does anyone have any tips as I am relatively new to Python, I have been learning it over the past week and have encountered some difficulties while attempting to implement BrainReg for co-registration. I was wondering if there might be someone I could contact—or any resources or example scripts available—who could assist me in developing a coregistration pipeline with the Allen Mouse Brain Atlas and the Developing Mouse Brain Atlas.