Hi experts,
I know that this is not how MRIQC is supposed to be used, but I have a question for you.
I used fmriprep to preprocess my data, and I am going to use SPM and pyMVPA for, respectively, GLM and MVPA. However, it turned out that I got some problems in the preprocessed data so I am going to delete my fmriprep folder (but keep the freesurfer one) and start the preprocessing again.
Since I wasn’t aware (my bad) of MRIQC and its usage, I didn’t run any quality metric on my raw images. so now my question is: is there any reasonable way I can run MRIQC on the raw images OR (even better) on the freesurfer/fmriprep folder to get quality metrics without needing to restart from scratch? The freesurfer surface extraction is quite time-consuming, so it would be great if I would be able to keep the work done so far.
Thanks,
Andrea