Convert ANTS antsRegistrationSyNQuick.sh rigid plus deformable warp image into FSL format

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Hi,

I applied a rigid+deformable transformation for my b0 image to map it on my T1 image.

Now I want to transfer the warp image in ANTS format into FSL format???

I know I can do the inverse using c3d to transfer FSL format into ANTS, but it works only for affine registration, not for non-linear registration.

Do you have any ideas?

Best

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Hi @Junhao_Wen ,

Just wondering if you managed to figure this out…I want to do the same, in the process of combining an affine transformation from FSL with a warp from ANTs.

Thanks!