Hi,
I wonder if it is possible to create a surface surf.gii file from the recon-all
output.
I made a mask from the aseg.mgz file a cerebellum mask.
mri_binarize --i $SUBJECTS_DIR/MySubject/mri/aseg.mgz \
--match 7 8 46 47 \
--o $SUBJECTS_DIR/MySubject/mri/cerebellum_mask.mgz
Then I converted it to a surfice file but it seems the file cannot be open in freeview.
mri_vol2surf --src $SUBJECTS_DIR/MySubject/mri/cerebellum_mask.mgz \
--out $SUBJECTS_DIR/MySubject/surf/cerebellum.surf.gii \
--regheader MySubject\
--hemi lh
What is the best approach to use?
Simon