Summary of what happened:
When i use --dcan-qc, XCP-D ran into an error:
ValueError: 'desc' is not a recognized entity. If you're sure you want to impose this constraint, set invalid_filters='allow'.
But, XCP-D work well, and can get all the output if I dont use --dcan-qc.
Command used (and if a helper script was used, a link to the helper script or the command generated):
#!/bin/bash
#SBATCH -J xcpd_rest2
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=4
#SBATCH --mem-per-cpu 8000
#SBATCH -p q_cn
module pruge
module load singularity
#!/bin/bash
#User inputs:
subj=$1
nthreads=40
output=/ibmgpfs/***/***/MRI001/results
work_dir=/ibmgpfs/***/***/MRI001/wd
freesurfer=/ibmgpfs/***/***/MRI001/freesurfer
fmriprep=/ibmgpfs/***/***/MRI001/results/fmriprep_rest2/${subj}
templateflow=/ibmgpfs/***/***/package/templateflow
#Run xcpd
echo ""
echo "Running xcpd on participant: $subj"
echo ""
#mkdir
if [ ! -d $work_dir/xcpd_rest2 ]; then
mkdir $work_dir/xcpd_rest2
fi
if [ ! -d $work_dir/xcpd_rest2/${subj} ]; then
mkdir $work_dir/xcpd_rest2/${subj}
fi
if [ ! -d $output/xcpd_rest2 ]; then
mkdir $output/xcpd_rest2
fi
if [ ! -d $output/xcpd_rest2/${subj} ]; then
mkdir $output/xcpd_rest2/${subj}
fi
# run xcp_d
export SINGULARITYENV_TEMPLATEFLOW_HOME='/ibmgpfs/***/***/package/templateflow'
unset PYTHONPATH
singularity run --cleanenv \
-B $fmriprep:/fmriprep \
-B $output/xcpd_rest2/${subj}:/output \
-B $work_dir/xcpd_rest2/${subj}:/work \
-B $freesurfer:/freesurfer \
-B $templateflow:/ibmgpfs/***/***/package/templateflow \
/ibmgpfs/***/***/apps/singularity/xcpd-0.4.0rc2.simg \
/fmriprep /output participant \
-w /work \
--participant_label ${subj} \
--task-id rest2 \
--cifti \
--nthreads 2 \
--omp-nthreads 2 \
--mem_gb 20000 \
--input-type fmriprep \
--smoothing 6 \
--despike \
--nuisance-regressors 36P \
--min_coverage 0.5 \
--dummy-scans 5 \
--lower-bpf 0.01 \
--upper-bpf 0.1 \
--bpf-order 2 \
--head_radius 50 \
--fd-thresh -1 \
--resource-monitor \
--dcan-qc
Version:
XCP-D Version: 0.4.0rc2
Environment (Docker, Singularity, custom installation):
Environment: Singularity
Data formatted according to a validatable standard? Please provide the output of the validator:
sub-10/
├── dataset_description.json
├── desc-aparcaseg_dseg.tsv
├── desc-aseg_dseg.tsv
├── logs
│ ├── CITATION.bib
│ ├── CITATION.html
│ ├── CITATION.md
│ └── CITATION.tex
├── sub-10
│ ├── anat
│ │ ├── sub-10_desc-aparcaseg_dseg.nii.gz
│ │ ├── sub-10_desc-aseg_dseg.nii.gz
│ │ ├── sub-10_desc-brain_mask.json
│ │ ├── sub-10_desc-brain_mask.nii.gz
│ │ ├── sub-10_desc-preproc_T1w.json
│ │ ├── sub-10_desc-preproc_T1w.nii.gz
│ │ ├── sub-10_desc-ribbon_mask.nii.gz
│ │ ├── sub-10_dseg.nii.gz
│ │ ├── sub-10_from-fsnative_to-T1w_mode-image_xfm.txt
│ │ ├── sub-10_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
│ │ ├── sub-10_from-MNI152NLin6Asym_to-T1w_mode-image_xfm.h5
│ │ ├── sub-10_from-T1w_to-fsnative_mode-image_xfm.txt
│ │ ├── sub-10_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
│ │ ├── sub-10_from-T1w_to-MNI152NLin6Asym_mode-image_xfm.h5
│ │ ├── sub-10_hemi-L_curv.shape.gii
│ │ ├── sub-10_hemi-L_inflated.surf.gii
│ │ ├── sub-10_hemi-L_midthickness.surf.gii
│ │ ├── sub-10_hemi-L_pial.surf.gii
│ │ ├── sub-10_hemi-L_smoothwm.surf.gii
│ │ ├── sub-10_hemi-L_sulc.shape.gii
│ │ ├── sub-10_hemi-L_thickness.shape.gii
│ │ ├── sub-10_hemi-R_curv.shape.gii
│ │ ├── sub-10_hemi-R_inflated.surf.gii
│ │ ├── sub-10_hemi-R_midthickness.surf.gii
│ │ ├── sub-10_hemi-R_pial.surf.gii
│ │ ├── sub-10_hemi-R_smoothwm.surf.gii
│ │ ├── sub-10_hemi-R_sulc.shape.gii
│ │ ├── sub-10_hemi-R_thickness.shape.gii
│ │ ├── sub-10_label-CSF_probseg.nii.gz
│ │ ├── sub-10_label-GM_probseg.nii.gz
│ │ ├── sub-10_label-WM_probseg.nii.gz
│ │ ├── sub-10_space-fsLR_den-91k_curv.dscalar.nii
│ │ ├── sub-10_space-fsLR_den-91k_curv.json
│ │ ├── sub-10_space-fsLR_den-91k_sulc.dscalar.nii
│ │ ├── sub-10_space-fsLR_den-91k_sulc.json
│ │ ├── sub-10_space-fsLR_den-91k_thickness.dscalar.nii
│ │ ├── sub-10_space-fsLR_den-91k_thickness.json
│ │ ├── sub-10_space-MNI152NLin2009cAsym_desc-brain_mask.json
│ │ ├── sub-10_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
│ │ ├── sub-10_space-MNI152NLin2009cAsym_desc-preproc_T1w.json
│ │ ├── sub-10_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
│ │ ├── sub-10_space-MNI152NLin2009cAsym_dseg.nii.gz
│ │ ├── sub-10_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
│ │ ├── sub-10_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
│ │ ├── sub-10_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
│ │ ├── sub-10_space-MNI152NLin6Asym_desc-brain_mask.json
│ │ ├── sub-10_space-MNI152NLin6Asym_desc-brain_mask.nii.gz
│ │ ├── sub-10_space-MNI152NLin6Asym_desc-preproc_T1w.json
│ │ ├── sub-10_space-MNI152NLin6Asym_desc-preproc_T1w.nii.gz
│ │ ├── sub-10_space-MNI152NLin6Asym_dseg.nii.gz
│ │ ├── sub-10_space-MNI152NLin6Asym_label-CSF_probseg.nii.gz
│ │ ├── sub-10_space-MNI152NLin6Asym_label-GM_probseg.nii.gz
│ │ └── sub-10_space-MNI152NLin6Asym_label-WM_probseg.nii.gz
│ ├── figures
│ │ ├── sub-10_acq-Nature1_fmapid-auto00000_desc-pepolar_fieldmap.svg
│ │ ├── sub-10_acq-Nature2_fmapid-auto00001_desc-pepolar_fieldmap.svg
│ │ ├── sub-10_acq-Nback_fmapid-auto00002_desc-pepolar_fieldmap.svg
│ │ ├── sub-10_acq-rest_fmapid-auto00003_desc-pepolar_fieldmap.svg
│ │ ├── sub-10_desc-about_T1w.html
│ │ ├── sub-10_desc-conform_T1w.html
│ │ ├── sub-10_desc-reconall_T1w.svg
│ │ ├── sub-10_desc-summary_T1w.html
│ │ ├── sub-10_dseg.svg
│ │ ├── sub-10_space-MNI152NLin2009cAsym_T1w.svg
│ │ ├── sub-10_space-MNI152NLin6Asym_T1w.svg
│ │ ├── sub-10_task-rest1_desc-aroma_bold.svg
│ │ ├── sub-10_task-rest1_desc-bbregister_bold.svg
│ │ ├── sub-10_task-rest1_desc-carpetplot_bold.svg
│ │ ├── sub-10_task-rest1_desc-compcorvar_bold.svg
│ │ ├── sub-10_task-rest1_desc-confoundcorr_bold.svg
│ │ ├── sub-10_task-rest1_desc-fieldmap_bold.svg
│ │ ├── sub-10_task-rest1_desc-fmapCoreg_bold.svg
│ │ ├── sub-10_task-rest1_desc-rois_bold.svg
│ │ ├── sub-10_task-rest1_desc-sdc_bold.svg
│ │ ├── sub-10_task-rest1_desc-summary_bold.html
│ │ └── sub-10_task-rest1_desc-validation_bold.html
│ ├── fmap
│ │ ├── sub-10_acq-Nature1_fmapid-auto00000_desc-coeff_fieldmap.nii.gz
│ │ ├── sub-10_acq-Nature1_fmapid-auto00000_desc-epi_fieldmap.nii.gz
│ │ ├── sub-10_acq-Nature1_fmapid-auto00000_desc-preproc_fieldmap.json
│ │ ├── sub-10_acq-Nature1_fmapid-auto00000_desc-preproc_fieldmap.nii.gz
│ │ ├── sub-10_acq-Nature2_fmapid-auto00001_desc-coeff_fieldmap.nii.gz
│ │ ├── sub-10_acq-Nature2_fmapid-auto00001_desc-epi_fieldmap.nii.gz
│ │ ├── sub-10_acq-Nature2_fmapid-auto00001_desc-preproc_fieldmap.json
│ │ ├── sub-10_acq-Nature2_fmapid-auto00001_desc-preproc_fieldmap.nii.gz
│ │ ├── sub-10_acq-Nback_fmapid-auto00002_desc-coeff_fieldmap.nii.gz
│ │ ├── sub-10_acq-Nback_fmapid-auto00002_desc-epi_fieldmap.nii.gz
│ │ ├── sub-10_acq-Nback_fmapid-auto00002_desc-preproc_fieldmap.json
│ │ ├── sub-10_acq-Nback_fmapid-auto00002_desc-preproc_fieldmap.nii.gz
│ │ ├── sub-10_acq-rest_fmapid-auto00003_desc-coeff_fieldmap.nii.gz
│ │ ├── sub-10_acq-rest_fmapid-auto00003_desc-epi_fieldmap.nii.gz
│ │ ├── sub-10_acq-rest_fmapid-auto00003_desc-preproc_fieldmap.json
│ │ └── sub-10_acq-rest_fmapid-auto00003_desc-preproc_fieldmap.nii.gz
│ ├── func
│ │ ├── sub-10_task-rest1_AROMAnoiseICs.csv
│ │ ├── sub-10_task-rest1_boldref.nii.gz
│ │ ├── sub-10_task-rest1_desc-CompCorA_mask.nii.gz
│ │ ├── sub-10_task-rest1_desc-CompCorC_mask.nii.gz
│ │ ├── sub-10_task-rest1_desc-CompCorT_mask.nii.gz
│ │ ├── sub-10_task-rest1_desc-CompCorW_mask.nii.gz
│ │ ├── sub-10_task-rest1_desc-confounds_timeseries.json
│ │ ├── sub-10_task-rest1_desc-confounds_timeseries.tsv
│ │ ├── sub-10_task-rest1_desc-MELODIC_mixing.tsv
│ │ ├── sub-10_task-rest1_from-scanner_to-boldref_mode-image_xfm.txt
│ │ ├── sub-10_task-rest1_from-scanner_to-T1w_mode-image_xfm.txt
│ │ ├── sub-10_task-rest1_from-T1w_to-scanner_mode-image_xfm.txt
│ │ ├── sub-10_task-rest1_space-fsLR_den-91k_bold.dtseries.nii
│ │ ├── sub-10_task-rest1_space-fsLR_den-91k_bold.json
│ │ ├── sub-10_task-rest1_space-MNI152NLin2009cAsym_boldref.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin2009cAsym_desc-brain_mask.json
│ │ ├── sub-10_task-rest1_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin2009cAsym_desc-preproc_bold.json
│ │ ├── sub-10_task-rest1_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_boldref.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_desc-aparcaseg_dseg.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_desc-aseg_dseg.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_desc-brain_mask.json
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_desc-brain_mask.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_desc-preproc_bold.json
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_desc-preproc_bold.nii.gz
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
│ │ ├── sub-10_task-rest1_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz
│ │ ├── sub-10_task-rest1_space-T1w_boldref.nii.gz
│ │ ├── sub-10_task-rest1_space-T1w_desc-aparcaseg_dseg.nii.gz
│ │ ├── sub-10_task-rest1_space-T1w_desc-aseg_dseg.nii.gz
│ │ ├── sub-10_task-rest1_space-T1w_desc-brain_mask.json
│ │ ├── sub-10_task-rest1_space-T1w_desc-brain_mask.nii.gz
│ │ ├── sub-10_task-rest1_space-T1w_desc-preproc_bold.json
│ │ └── sub-10_task-rest1_space-T1w_desc-preproc_bold.nii.gz
│ └── log
│ ├── 20230703-203429_e632ff97-101e-4ae4-9f13-3b6ed322d710
│ │ ├── crash-20230703-203617-lizhilin-runwise_avg-fa3e8adc-46e8-46c5-8323-1f107a28fbb2.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_032228f4-d61c-4815-87b3-d250660af622
│ │ └── fmriprep.toml
│ ├── 20230703-203802_13ad78df-060c-4bb3-b6b7-cfaa60b1e400
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-b70666f5-b0ff-45ae-a82b-57d34db6232a.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_270bd193-5256-4ad4-94ec-6c867923ca2c
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-d9728d6c-221c-4852-a082-97ba31599ee7.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_428fe35d-bfdf-43db-86c1-9797867eda34
│ │ ├── crash-20230703-203828-lizhilin-runwise_avg-f5a9c461-6bc3-46ce-98ee-e61e62fed247.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_4c704386-d7e2-45f8-819e-cc12c8881aed
│ │ └── fmriprep.toml
│ ├── 20230703-203802_5a19f6d3-b7a0-4770-bef0-7bcd369f143b
│ │ └── fmriprep.toml
│ ├── 20230703-203802_7da24362-5ed9-49ce-9bab-98735ff11381
│ │ └── fmriprep.toml
│ ├── 20230703-203802_8a41ab3e-6779-47bd-8f20-12eebbe68db9
│ │ ├── crash-20230703-203830-lizhilin-runwise_avg-92e2506f-f8cd-4064-977d-8c65af331882.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_94c7d89d-2dbb-42a5-980c-0c1a8cbc5914
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-b39c4d28-82fb-4748-aa26-b9fe7acfae51.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_9c04e0ab-e24e-4591-8156-7b54e6eb45cb
│ │ ├── crash-20230703-203830-lizhilin-runwise_avg-3443a5c6-5385-4fc3-bb75-128979eb6998.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_aee58a5b-b476-4e9c-9e06-36ee1f397cc4
│ │ └── fmriprep.toml
│ ├── 20230703-203802_afe994a9-3b78-4907-8944-2f5373d25906
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-6f89695e-2760-4e8e-a759-db536b4dfc99.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_bc6db22e-eecc-4f78-a1ab-fcc96dfdfe2c
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-a98ad9db-0e4a-453d-a8c7-828c50ea3fa3.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_c1cbdf02-d07a-4bf6-bd02-b36b7a6f69e5
│ │ └── fmriprep.toml
│ ├── 20230703-203802_c75286dc-8fb2-43d9-9caa-f7c79d1b1696
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-e5182f98-4539-4e19-9435-dcaba9ac9f96.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_c8212652-9a8e-43a2-b586-9c28991609fc
│ │ └── fmriprep.toml
│ ├── 20230703-203802_c842e517-4ca4-462c-941a-fd9f78a38f34
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-adacd72d-6c00-4d4f-afa5-e06332411cd2.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_cd416864-edb2-4810-a892-d1c65400598a
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-671b1290-eb0f-4e68-8b12-17ccec29e8ed.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_d4adc01f-23bf-4e69-8dc9-2c46885d8f66
│ │ ├── crash-20230703-203830-lizhilin-runwise_avg-69831c55-97b9-498f-80e9-b9d43cb9b384.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_e60d62db-6a01-4413-9c2e-35e10e444dd8
│ │ ├── crash-20230703-203830-lizhilin-runwise_avg-2cf4a918-df29-4333-9c56-b2a598580cd2.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_efaa1f95-5794-4fd6-bccf-6c8527972cd7
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-c64c8b13-69ec-415a-b26a-580af5fa1e82.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_f29d18a1-03b9-4a71-8e2a-a3177d082bf6
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-8406c988-9677-4c5e-9250-8c952ce8feb1.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203802_fc9b987e-7f7f-4e59-94ee-df848d4bb8f1
│ │ ├── crash-20230703-203839-lizhilin-runwise_avg-15a6729a-ddc6-4cb1-a96c-aecfc9be6dc4.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203803_022b9535-8f6a-4001-b624-c01b70beefee
│ │ ├── crash-20230703-203831-lizhilin-runwise_avg-6b10aa44-c33b-4801-8168-45ff5ce877ee.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203803_04df178f-eafb-4817-98c7-50c9621b0954
│ │ └── fmriprep.toml
│ ├── 20230703-203803_0f910c80-19b8-458e-b775-f46e0f478c0b
│ │ └── fmriprep.toml
│ ├── 20230703-203803_2133c339-4f91-4e69-9f67-bd847f331f34
│ │ └── fmriprep.toml
│ ├── 20230703-203803_26299e57-5b8e-4995-9738-63486f6f3043
│ │ ├── crash-20230703-203830-lizhilin-runwise_avg-57160717-56a0-4cc9-8915-d0b6d71a91d8.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203803_3b0f002c-be39-44e1-9c17-b8f47ab228f9
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-7e72975c-4bdb-4972-b277-ba35e8c2d56b.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203803_50810dbb-6b83-4dac-926c-c08e87f3abe5
│ │ └── fmriprep.toml
│ ├── 20230703-203803_54a36cbc-983b-450b-9f23-87a512ef201e
│ │ └── fmriprep.toml
│ ├── 20230703-203803_575164da-300a-4933-a701-d7e0422b7901
│ │ └── fmriprep.toml
│ ├── 20230703-203803_5c843b5a-4c60-44c5-bcdf-64f19a9fc721
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-e938aaa7-f1eb-428b-915f-eafa24b683fe.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203803_7123b208-944f-45d9-a74e-cc26ec612e84
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-e5142072-2170-494c-8cb7-7ebe31e94107.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203803_78b6c00a-4391-44c7-9fad-9757f2beaa88
│ │ └── fmriprep.toml
│ ├── 20230703-203803_884e6168-7639-4ad1-9231-efef59f2a762
│ │ └── fmriprep.toml
│ ├── 20230703-203803_8ee75feb-0e9c-416a-b944-669ac9400b97
│ │ ├── crash-20230703-203829-lizhilin-runwise_avg-4913f489-7258-4720-a902-5668232126d9.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203803_a1c41d8f-c485-4e73-a3d4-d786d92c11a7
│ │ └── fmriprep.toml
│ ├── 20230703-203803_a7bcf845-0753-4453-9289-803c0273b843
│ │ └── fmriprep.toml
│ ├── 20230703-203803_c7ef6b82-49bf-4a03-9f29-e6e783b2256e
│ │ └── fmriprep.toml
│ ├── 20230703-203803_c8939d98-9577-4087-ab32-7061397780bd
│ │ └── fmriprep.toml
│ ├── 20230703-203803_e2ea39fc-7f13-4072-8326-2169e4018c6d
│ │ └── fmriprep.toml
│ ├── 20230703-203803_f6bacf2c-b851-4d80-9b42-fb05bcf1196d
│ │ └── fmriprep.toml
│ ├── 20230703-203803_fa70db80-8edf-4252-b070-a3f89bca7628
│ │ └── fmriprep.toml
│ ├── 20230703-203803_facf11e9-a1a0-427e-8a48-c55ebb988cd2
│ │ ├── crash-20230703-203840-lizhilin-runwise_avg-b2d30b6f-4c86-46c8-941e-7a2735c37fd7.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203804_0aa702b8-84f6-41fd-ab20-91287415de0b
│ │ ├── crash-20230703-203842-lizhilin-runwise_avg-f8a25530-d57a-4026-bd4d-a55b8a9fa3e7.txt
│ │ └── fmriprep.toml
│ ├── 20230703-203804_9d4b972a-8533-40f2-8a5a-45112b1b9d79
│ │ ├── crash-20230703-203830-lizhilin-runwise_avg-012d8db5-cd8d-49bd-aa8c-cd5ddf2d69dc.txt
│ │ └── fmriprep.toml
│ └── 20230703-204150_eadb87ba-cd6e-4121-8177-1b6a9e41c098
│ └── fmriprep.toml
└── sub-10.html
Relevant log outputs (up to 20 lines):
230704-11:28:16,646 nipype.workflow INFO:
[Node] Finished "_ds_correlation_cifti_files12", elapsed time 0.005891s.
230704-11:28:16,655 nipype.workflow INFO:
[Job 92] Completed (xcpd_wf.single_subject_16_wf.cifti_postprocess_0_wf.postproc_derivatives_wf.ds_correlation_cifti_files).
Traceback (most recent call last):
File "/usr/local/miniconda/bin/xcp_d", line 8, in <module>
sys.exit(_main())
File "/usr/local/miniconda/lib/python3.8/site-packages/xcp_d/cli/run.py", line 457, in _main
main(args=args)
File "/usr/local/miniconda/lib/python3.8/site-packages/xcp_d/cli/run.py", line 606, in main
failed_reports = generate_reports(
File "/usr/local/miniconda/lib/python3.8/site-packages/xcp_d/interfaces/report_core.py", line 161, in generate_reports
exsumm.collect_inputs()
File "/usr/local/miniconda/lib/python3.8/site-packages/xcp_d/interfaces/execsummary.py", line 121, in collect_inputs
mosaic = self._get_bids_file(query)
File "/usr/local/miniconda/lib/python3.8/site-packages/xcp_d/interfaces/execsummary.py", line 52, in _get_bids_file
files = self.layout.get(**query)
File "/usr/local/miniconda/lib/python3.8/site-packages/bids/layout/layout.py", line 626, in get
raise ValueError(msg + "If you're sure you want to impose "
ValueError: 'desc' is not a recognized entity. If you're sure you want to impose this constraint, set invalid_filters='allow'.