dHCP pipeline FSL eyes

When running the dHCP pipeline, I am seeing images that I can view with FSLeyes, but there are also images under the file “Natives” that I cannot open with FSLeyes. Would FreeSurfer be a better way to view these?

Hello @cpletcher,

Those are probably the surfaces. You can view them with something like Connectome Workbench:


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Hi @cpletcher

The *.gii extension is for gifti files, the *.dscalar.nii are dense scalar cifti files. As @jcupitt advises, these can all be opened with connectome workbench. If you want to use FSLeyes, the latest version will open *.gii. However this must be downloaded separately from the full FSL install.


Cheers, Sean

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Got it, thanks so much!