When running the dHCP pipeline, I am seeing images that I can view with FSLeyes, but there are also images under the file “Natives” that I cannot open with FSLeyes. Would FreeSurfer be a better way to view these?
Those are probably the surfaces. You can view them with something like Connectome Workbench:
*.gii extension is for gifti files, the
*.dscalar.nii are dense scalar cifti files. As @jcupitt advises, these can all be opened with connectome workbench. If you want to use FSLeyes, the latest version will open
*.gii. However this must be downloaded separately from the full FSL install.
Got it, thanks so much!