https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI/FreeSurferColorLUT
This is basically description of the different possible labels and options.
The --a2009s flag is consistent with the 111xx label set. It seems from the log that we run it for all participants with that flag. Maybe it fails for some and then falls back to the simpler label version which the --a2009s is trying to replace.
/freesurfer/sub-drisc26/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
/freesurfer/sub-drisc26/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
/freesurfer/sub-drisc26/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
/freesurfer/sub-drisc26/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
/freesurfer/sub-drisc26/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
/freesurfer/sub-drisc26/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
/freesurfer/sub-drisc26/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc26 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
/freesurfer/sub-drisc26/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc26 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
/freesurfer/sub-drisc26/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
/freesurfer/sub-drisc26/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
/freesurfer/sub-drisc26/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
/freesurfer/sub-drisc26/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
/freesurfer/sub-drisc26/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
/freesurfer/sub-drisc26/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc26 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
/freesurfer/sub-drisc26/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc26 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
/freesurfer/sub-drisc26/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc26 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
/freesurfer/sub-drisc27/scripts/recon-all.local-copy : set xopts = fsr-getxopts **mri_aparc2aseg** $XOptsFile
;
/freesurfer/sub-drisc27/scripts/recon-all.local-copy : set cmd = ( mri_aparc2aseg --s $subjid --volmask --aseg aseg.presurf.hypos \
/freesurfer/sub-drisc27/scripts/recon-all.local-copy : set CMDF = mri_aparc2aseg _${parc}.cmd
/freesurfer/sub-drisc27/scripts/recon-all.local-copy : set xopts = fsr-getxopts **mri_aparc2aseg** $XOptsFile
;
/freesurfer/sub-drisc27/scripts/recon-all.local-copy : set cmd = ( mri_aparc2aseg --s $subjid --labelwm --hypo-as-wm --rip-unknown \
/freesurfer/sub-drisc27/scripts/recon-all.local-copy : mri_aparc2aseg
/freesurfer/sub-drisc27/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc27 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
/freesurfer/sub-drisc27/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc27 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
/freesurfer/sub-drisc27/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc27 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
/freesurfer/sub-drisc27/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc27 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
/freesurfer/sub-drisc27/scripts/recon-all.cmd : mri_aparc2aseg --s sub-drisc27 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
/freesurfer/sub-drisc27/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc27 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
/freesurfer/sub-drisc27/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc27 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
/freesurfer/sub-drisc27/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc27 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
/freesurfer/sub-drisc27/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc27 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
/freesurfer/sub-drisc27/scripts/recon-all.log : mri_aparc2aseg --s sub-drisc27 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /opt/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz