We wanted to re-run mindboggle with the following specification: --no_moments --no_spectra
However, we realised that the normal mindboggle command doesn’t seem to be working, even thought it
was fine for a us a few months ago, using the same environment.
running the command given on the mindboggle website:
docker run --rm -ti -v $HOST:$DOCK nipy/mindboggle $IMAGE --id $ID
we get the following error:
INFO: /root/matlab/startup.m does not exist … creating
/neurodocker/startup.sh: line 5: /home/jovyan/work/T1.nii.gz: No such file or directory
…eventhough T1.nii.gz is in the directory
Has something changed that isn’t specified in the documentation?