Hey guys,
I’m currently developing a little Python package and I want to make some examples using openfMRI-data. Is there an easy way to download an openfMRI dataset (both raw and preprocessed parts) using at Python library or something?
Cheers,
Gilles
Hey @Gilles_de_Hollander,
worry no more and meet your new best friend: DataLad!
DataLad not only allows you to versioning basically everything (of course also data) and
reproduce/rerun a complete analysis with just one command, but also includes a super powerful search engine, which you can use to query a huge amount of datasets (10 TB). Furthermore, you can use DataLad to directly download complete datasets or just certain files.
Here’s a great example from @miykael’s nipype tutorial.
HTH, best, Peer
Hey @PeerHerholz,
This sounds great.
One devilish detail is that I want to make examples for my Python package in sphinx, using sphinx-gallery. In a perfect world, this would mean that I can run a Python script on any box (like a readthedocs.org server) and it will just work. (Like nilearn’s examples, e.g. here)
Anyone experience with this?
-Gilles