DTI analysis in PIG brain,

Software Support
1

Summary of what happened:

I am trying to do DTI analysis suing FSL software. But since MNI152 is related to human brain. How do I register a pig brain atlas and use it to tbss analysis.

Command used (and if a helper script was used, a link to the helper script or the command generated):

I have used tbss_2_reg -t
the tbss_3_postreg -S but after this when I viewed the mean_FA some of the part got canceled out

2

Hi @Sanjida and welcome to neurostars!

You might find the script in $FSLDIR/etc/xtract_data/standard/F99 helpful. It is for macaques, but you can replace the relevant standard space with that for pigs, e.g., ( https://doi.org/10.1101/2020.10.13.337436). See more here: XTRACT - FslWiki

Best,
Steven