Error in fmripep on singularity - related to anatomical file?

fmriprep
#1

Hi,
I’m running the latest fmriPrep (1.5RC) on singularity (with a slurm).
I use the same snippet that successfully ran a bunch of pre processing subjects from another study.
Here I’ve encountered an issue I can’t figure out.
The full output is attachedoutputfmriPrep.txt (19.5 KB)

Any pointers?

#2

Looks like you have some oddly named BOLD series:

sub-1343_ses-1_task--rest_bold.nii.gz
sub-1343_ses-1_task-_bold.nii.gz

-rest and the empty string are invalid task labels. It seems likely that the error is from code that assumes that you have valid filenames.

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