Hello everyone,
I’d like to extract brain ROIs, time series and estimate correlation matrices from ADNI dataset which are 3D nii images.
Thank you so much
Hello everyone,
I’d like to extract brain ROIs, time series and estimate correlation matrices from ADNI dataset which are 3D nii images.
Thank you so much
Hello,
There are a few option you can use for this: The CONN Toolbox (has a GUI so is a bit more user friendly), FSL Feat (more easily scriptable), and XCPEngine (also scriptable, modular using multiple softwares).
Some considerations to guide your choice:
These are just a few things to keep in mind. Hope this helps!
Best,
Steven
Hi @Steven
Thank you so much for reply. I’ve tried FSL but I got error when I use my dataset. I’m ok with scripting. I’m using nilearn package and I’ll try to use HO atlas. Also, I’ll try to use either CONN or XCOEngine.
Warm Regards
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