I have effects sizes from my first level analysis of preprocessed input cifti data. In other words, I now have a cifti output file with the effects size for a given contrast for each run in my dataset (which corresponds to 91K array of data) and I want to do a fixed-effects analysis to combine runs per subject/task/session before group analysis.
Sorry, really stupid follow-up question. How do I use this? As far as I can tell, the main way to install fitlins is through a singularity/docker container. If I want to integrate this into my current pipeline, I am naively unsure how (without cloning the whole repo?)
I would probably just copy these lines. It’s not really split into useful functions for importing.
If there is something from fitlins you do want to use, you can just pip install fitlins into the environment you’re working in and then import fitlins in your script. It doesn’t really require Docker. That’s just a way to bundle FSL and other non-Python dependencies. If you’re only using nilearn bits, a conda environment is as good as a Docker image and less cumbersome.