Summary of what happened:
My TR is 1.5 sec, but after running fMRIpost-AROMA, it is set to 1.0 sec.
Command used:
docker run --rm -it \
-v "${FMRIPREP_DIR}:/prep:ro" \
-v "${AROMA_DIR}:/out" \
-v "${WORK_DIR}/${PROCESS}:/work" \
nipreps/fmripost-aroma:main \
/prep /out participant \
--skip_bids_validation \
--participant-label ${PNUM} \
--task-id ${TASK} \
--denoising-method nonaggr \
--melodic-dimensionality 20 \
--nprocs 8 \
--omp-nthreads 2 \
--mem 24000 \
--notrack \
-w /work
Version:
fMRIPost-AROMA version 0.1.11
fmriprep 24.0.1
Environment (Docker, Singularity / Apptainer, custom installation):
Ubuntu 20.04.6 LTS, Docker 4.33.0
Data formatted according to a validatable standard? Please provide the output of the validator:
Relevant log outputs (up to 20 lines):
~/mridata/rvh/derivatives/fmriprep/sub-128/func$ 3dinfo -tr sub-128_task-rvh_run-01_space-MNI152NLin6Asym_res-2_desc-preproc_bold.nii.gz
1.500000
~/mridata/rvh/derivatives/aroma/sub-128/func$ 3dinfo -tr sub-128_task-rvh_run-01_space-MNI152NLin6Asym_res-2_desc-nonaggrDenoised_bold.nii.gz
** AFNI converts NIFTI_datatype=64 (FLOAT64) in file /home/mkkim11/mridata/rvh/derivatives/aroma/sub-128/func/sub-128_task-rvh_run-01_space-MNI152NLin6Asym_res-2_desc-nonaggrDenoised_bold.nii.gz to FLOAT32
Warnings of this type will be muted for this session.
Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
1.000000
Hi,
I am having trouble with using fMRIpost-AROMA. My sequence has TR that is longer than 1.0 sec, and fMRIpost-AROMA sets it to 1.0 and I can’t run GLM or other analyses due to the timing mismatch results from this. What can I do? Thank you in advance.