Hello, when i install the docker version of Fmriprep, do i need to install the external dependencies separately or does the installer take care of this?
e.g.
From the webpage…
fMRIPRep requires some other neuroimaging software tools that are not handled by the Python’s packaging system (Pypi) used to deploy the fmriprep
package:
- FSL (version 5.0.9)
- ANTs (version 2.2.0 - NeuroDocker build)
- AFNI (version Debian-16.2.07)
- C3D (version 1.0.0)
- FreeSurfer (version 6.0.1)
- ICA-AROMA (commit e8d7a58, post v0.4.4-beta)
- bids-validator (version 1.4.0)
- connectome-workbench (version Debian-1.3.2)
Thanks for helping me out!
Mark