I’ve run fmriprep on several participants/session. For one session of one person, there is very bad motion (max FD ~12) in the end of the scan.
As a result, fmriprep flags all volumes as outliers and compcor only has a single regressor.
Is there anything I can do to ‘save’ this data? E.g. could I remove the last about 1 minute from the data (as in deleting the volumes) and rerun fmriPrep?
Many thanks