docker run --rm \ -v /Volumes/Passport/bids/Nifti:/data:ro \ -v /Volumes/Passport/bids/dockerout:/out \ -v /Volumes/Passport/bids/license.txt:/opt/freesurfer/license.txt \ -v /Volumes/Passport/bids/scratch:/scratch \ -w /Volumes/Passport/bids/scratch \ poldracklab/fmriprep:latest \ /data /out/out \ participant \ -w /out/work/
There is a working directory with files in /out/work. My script crashed midway through because my external hard drive came unplugged. So I’m trying to resume the processing, but it looks on my terminal that everything is restarting from the very beginning? Is there something I need to do to let fmriprep know to resume, using the specified work directory?