Hi,
I run into this error after running fmriprep 16 hours later with docker, any thoughts about this?
ERRO[40561] error waiting for container: invalid character ‘c’ looking for beginning of value
My computer info: 4 core, 16G RAM, Monterey 12.6, and the command line is as follow:
docker run -ti --rm
-v /Users/wang/Desktop/Research_projects/Functional/Data/Reorganized:/data:ro
-v /Users/wang/Desktop/Research_projects/Functional/fMRI_Prep:/out
-v /Users/wang/Desktop/Freesurfer/license.txt:/opt/freesurfer/license.txt
nipreps/fmriprep:22.0.1
/data /out
participant
–skip_bids_validation --participant_label 1 --cifti-output 91k --medial-surface-nan
–use-aroma --error-on-aroma-warnings
–fs-subjects-dir /Users/wang/Desktop/Research_projects/Functional/T1_analysis
–output-spaces MNI152NLin6Asym:res-2 MNI152NLin2009cAsym
–output-layout bids --low-mem --resource-monitor
–work-dir /Volumes/SSD_WANG/working --verbose
Another question, I got my fmriprep hanging several times because of memory thing, but it has already eaten up 200G, next time I rerun it for example with tag --low-mem, it seems like it does not pick up what has been done and continue to consume another 200G or so, my question is should I use the exact same command to let it pick up what has been done and how to clean up the cache the previous one created to release the space?
Thank you!
Best,
Joey