Can anyone help me with identifying the following error. After 8 hours of processing one subject the following appeared:
200424-18:50:48,360 nipype.workflow INFO:
[Node] Finished “fmriprep_wf.single_subject_01_wf.func_preproc_task_closedeyes_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask”.
200424-18:50:51,979 nipype.workflow ERROR:
could not run node: fmriprep_wf.single_subject_01_wf.func_preproc_task_run01_wf.bold_hmc_wf.mcflirt
200424-18:50:51,985 nipype.workflow ERROR:
could not run node: fmriprep_wf.single_subject_01_wf.func_preproc_task_run04_wf.bold_hmc_wf.mcflirt
200424-18:50:51,988 nipype.workflow ERROR:
could not run node: fmriprep_wf.single_subject_01_wf.func_preproc_task_run02_wf.bold_hmc_wf.mcflirt
200424-18:50:51,992 nipype.workflow ERROR:
could not run node: fmriprep_wf.single_subject_01_wf.func_preproc_task_run03_wf.bold_hmc_wf.mcflirt
fMRIPrep failed: Workflow did not execute cleanly. Check log for details
Preprocessing did not finish successfully. Errors occurred while processing data from participants: 01 (4). Check the HTML reports for details.
fMRIPrep: Please report errors to https://github.com/poldracklab/fmriprep/issues
I’ve checked the log file that showed the following:
Node Name: fmriprep_wf.single_subject_01_wf.func_preproc_task_run03_wf.bold_hmc_wf.mcflirt
Node Name: fmriprep_wf.single_subject_01_wf.func_preproc_task_run04_wf.bold_hmc_wf.mcflirt
Node Name: fmriprep_wf.single_subject_01_wf.func_preproc_task_run01_wf.bold_hmc_wf.mcflirt
Node Name: fmriprep_wf.single_subject_01_wf.func_preproc_task_run02_wf.bold_hmc_wf.mcflirt
Error doesn’t have any code or reference. For the output all anat output is correct, for the func folder only one run has been processed out of 5.
The question is:
- What is the error & why did it happened?
- Do I need to start all over again? (took 8 hours to pop that error ;( )
I’d appreciate any help! I have over 30 participants waiting to be processed so I want to avoid it in future too.
PS. Note maybe it’s of some relevance to the error: the functional run that went through was MPRAGE sequence and those that didn’t were all MB sequences.