Dear all,
I will appreciate your help.
I’m using Ubuntu 20.04.2, thus I believe I do not need a container.
I get this error:
File "/home/taliw/.local/bin/fmriprep", line 11, in <module>
load_entry_point('fmriprep==20.2.1', 'console_scripts', 'fmriprep')()
File "/home/taliw/.local/lib/python3.8/site-packages/fmriprep-20.2.1-py3.8.egg/fmriprep/cli/run.py", line 21, in main
ModuleNotFoundError: No module named 'sentry_sdk'
My script:
bids_root_dir=$HOME/openneuro_tutorial/ds000102
preprocess_output_dir=$HOME/openneuro_tutorial/ds000102/fmriprep
subj=01export TEMPLATEFLOW_HOME=$HOME/openneuro_tutorial/templateflow
export FS_LICENSE=$HOME/openneuro_tutorial/license.txtfmriprep $bids_root_dir $preprocess_output_dir participant
–participant-label $subj
–skip_bids_validation
–md-only-boilerplate
–fs-license-file $HOME/openneuro_tutorial/license.txt
–fs-no-reconall
–output-spaces MNI152NLin2009cAsym:res-1
–nthreads $nthreads
–stop-on-first-crash
-w $HOME
My second question in on
–output-spaces MNI152NLin2009cAsym:res-1
“the res-*
modifier does not define the resolution used for the spatial normalization.”
So, if it is not for registration step, for what is it for?
Thank you,
Tali