Hi,
I am preprocessing a dataset of 170 subjects with fmriprep and the processing stops during the brain extraction. Can you help me figuring out what the problem is?
I attached crash log from an example participant.
I am using the version 1.3.2 and I´ve copied the specs for the file and the command from the html:
Summary
- Subject ID: 109
- Structural images: 1 T1-weighted
- Functional series: 1
- Task: rest (1 run)
- Resampling targets: fsaverage5, MNI152NLin2009cAsym
- FreeSurfer reconstruction: Run by fMRIPrep
Anatomical
Anatomical Conformation
- Input T1w images: 1
- Output orientation: RAS
- Output dimensions: 240x320x320
- Output voxel size: 0.85mm x 0.85mm x 0.85mm
- Discarded images: 0
Functional
Note on orientation: qform matrix overwritten
The qform has been copied from sform.
About
- FMRIPrep version: 1.3.2
- FMRIPrep command:
/usr/local/miniconda/bin/fmriprep /data/pt_02147/BIDS/ /data/pt_02147/BIDS_OUT/ --template MNI152NLin2009cAsym --template-resampling-grid /data/pt_02147/MNI152_T1_2mm.nii.gz --no-submm-recon --fs-license-file /data/pt_02147/prep/license.txt -w /data/pt_02147/BIDS_WD/ participant --participant-label 109
- Date preprocessed: 2019-04-09 08:57:14 +0000
Errors
- Node Name: fmriprep_wf.single_subject_109_wf.anat_preproc_wf.brain_extraction_wf.init_aff
crash-20190409-090353-lauckner-init_aff-5f5a8b29-efe6-4d50-9c98-4234b16d9b79.txt (3.1 KB)