Hi,
Previously I’ve used fMRIprep with no errors, however when I add my fieldmap data (pepolar) I’m getting memory error. In the below you can find data and computer specifics
-I’m using a computer with 12gb RAM, 8 core, Ubuntu 18.04
-Data: MB factor 4, 1.5x1.5x1.5, number of measurements between 125-305
- The code I’ve used
fmriprep-docker /home/beyza/Desktop/BIDS/Nifti/ /home/beyza/Desktop/preprocessing --participant-label 01 --fs-license-file $FREESURFER_HOME/license.txt --ignore slicetiming --low-mem - When I check the error log, the last lines are always same
File “/usr/local/miniconda/lib/python3.7/site-packages/nibabel/volumeutils.py”, line 965, in apply_read_scaling
arr = arr * slope
MemoryError
While, I’m searching, I’ve seen a few things about docker memory allocation but, it seems like this problem mostly seen in Windows and MacOS. When I get system specifics from docker, it correctly shows the memory. So I’m wondering, if there is a problem with my installation or something like that. Or my hardware is not enough with this process?
Thanks in advance!