From the fmriprep doc pages I gathered that in order to avoid fmriprep trying to pull TemplateFlow from the web, I should pass the
--notrack flag to the fmriprep call (in addition to making sure that the TemplateFlow files are accessible somewhere on the file system).
I tried that, but still fmriprep tries to pull templateflow. Any idea what is happening? The command I use is this one (with the latest fmriprep):
export SINGULARITYENV_TEMPLATEFLOW_HOME=/gpfs/project/projects/bpsydm/fmriprep/.cache/templateflow export TEMPLATEFLOW_HOME=$SINGULARITYENV_TEMPLATEFLOW_HOME singularity run --bind /gpfs --cleanenv /gpfs/project/projects/bpsydm/fmriprep/fmriprep_latest.simg /gpfs/project/projects/bpsydm/lorasick /gpfs/project/projects/bpsydm/lorasick/derivatives participant --participant-label $SUB --fs-license-file /gpfs/project/projects/bpsydm/license.txt --anat-only --skip_bids_validation --notrack