Hi, Dear all,
i am running fmriprep with the command:
fmriprep-docker --fs-license-file license.txt/ prep3/Nifti prep3/derivatives participant
my computer is window 10 with subsystem: ubuntu 18.04
i use fmriprep 20.2.3
Everthing seems to go well , but i feel it is very slow and there is always a moment that the running procedure stay at one time point for a very very long time. please see my attach:
i do not know when it will totally finished and have no experienced how it will show the procedures are finished.
i check the resulted folder in “derivatives”, including “fmriprep” and “freesurfer” folders.
in the “fmriprep” folder,
i tried to open one .html file, without anything shown. It may be understandable that the .html file with 0 KB can shown nothing. But in my former running procedure, .html files with 1 KB also only show such information: " Note on orientation: qform matrix overwritten
The qform has been copied from sform. The difference in angle is 5.8e-07 radians. The difference in translation is 1.7e-14mm.“ana”, “figures” and “log” folders produced.
i open one file “sub-01_task-soc_run-1_desc-validation_bold.html” with 1 KB size in “figures” folder, it does not show any plot, but only a line of text " Note on orientation: qform matrix overwritten
The qform has been copied from sform. The difference in angle is 5.8e-07 radians. The difference in translation is 1.7e-14mm."
SO i wonder if anything wrong? what the correct files will be produced.
Thank you for information
Greetings
Chen
