Fmriprep Report Images

Hi there,
I have used fmriprep to preprocess some images. When I look at the figure in html report that fades between the template and the spatially normalised scan there seems to be good normalisation. However, when I look at the actual scan (space-MNI152NLin2009cAsym) there is a discrepancy as the scan looks very different. I wanted to know if this is normal and why this might be?

Many thanks,

Hi Isaac,

the scan looks very different

Could you share some more details? Perhaps the MNI152NLin2009cAsym normalization report and also a screenshot of what you are seeing.