fMRIPrep shows space identifier “MNI152NLin2009cAsym” is invalid

Software Support
1

Summary of what happened:

I launched a batch job at a SLURM cluster, job 4 success and job 2, 3 failed.

Command used (and if a helper script was used, a link to the helper script or the command generated):

sbatch \
  --export=analysis_name=main_gari,fp_version=25.1.4,slurm_log_dir=/scratch/tlei/VOTCLOC/dipc_fmriprep/25.1.4_main_gari_2026-04-14,sublist=/scratch/tlei/VOTCLOC/dipc_fmriprep/25.1.4_main_gari_2026-04-14/subseslist.txt,output_base=/scratch/tlei/VOTCLOC,bids_dir=/data/tlei/VOTCLOC/BIDS_new \
  --array=1-4 \
  -J fp_s03_01 \
  -o /scratch/tlei/VOTCLOC/dipc_fmriprep/25.1.4_main_gari_2026-04-14/%J_%x-%A-%a_13-00.o \
  -e /scratch/tlei/VOTCLOC/dipc_fmriprep/25.1.4_main_gari_2026-04-14/%J_%x-%A-%a_13-00.e \
  /scratch/tlei/soft/launchcontainers/MR_pipelines/03_fmriprep/run_dipc/src_fmriprep.slurm

then

module load Apptainer/1.3.5 && \
unset PYTHONPATH && \
export PYTHONDONTWRITEBYTECODE=1 && \

singularity run \
  --cleanenv \
  --no-home \
  --writable-tmpfs \
  -B /data/tlei/VOTCLOC/BIDS_new:/bids \
  -B /scratch/tlei/VOTCLOC/derivatives_new/fmriprep-25.1.4_main_gari:/output \
  -B /scratch/tlei/VOTCLOC/code:/code \
  -B /scratch/tlei/fmriprep_tmps_25.1.4_main_gari/.cache/templateflow:/templateflow \
  -B /scratch/tlei/fmriprep_tmps_25.1.4_main_gari/.cache/fmriprep:/work \
  -B /scratch/tlei/VOTCLOC/BIDS/derivatives/freesurfer-with_t2:/fsdir \
  /scratch/tlei/containers/fmriprep_25.1.4.sif \
  /bids \
  /output \
  participant \
  --participant-label 06 \
  -w /work/ \
  -vv \
  --fs-license-file /bids/.license \
  --omp-nthreads 10 \
  --nthreads 20 \
  --mem_mb 50000 \
  --skip-bids-validation \
  --fs-subjects-dir /fsdir \
  --stop-on-first-crash \
  --force bbr \
  --bold2anat-init t2w \
  --output-spaces T1w func MNI152NLin2009cAsym fsnative fsaverage

Version:

25.1.4

Environment (Docker, Singularity / Apptainer, custom installation):

Singularity

Data formatted according to a validatable standard? Please provide the output of the validator:

PASTE VALIDATOR OUTPUT HERE

Relevant log outputs (up to 20 lines):

space identifier “MNI152NLin2009cAsym” is invalid.

Valid identifiers are: Fischer344, T1w, T2w, anat, fsnative, func, run, sbref, session, individual, dwi, etc

Screenshots / relevant information: