I used fmriprep to process data with lesion mask, but it had been struck at a certain step for long time (at least 5 days) without error report and also I’m not sure if it’s still running.
fmriprep was struck at this step:
Here is some information that may be helpful in solving the problem
fmriprep-docker version: 20.2.1
The command I used to run fmriprep:
fmriprep-docker /data/disk1/test/ /data/disk1/test_output --participant-label sub-FCS029 --cifti-output 91k --fs-license-file /opt/software/freesurfer/license.txt --use-aroma --user $(id -u):$(id -g)
And I also placed the lesion mask data and the .ignore file:
This is the image of T1w and lesion mask:
Many thanks for your help!