Fmriprep v1.4.0 resource-monitor log not written

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1

Hi,

I don’t think fmriprep/nipype is writing the resource monitor log. Here is my fmriprep command:

~/anaconda3/bin/fmriprep-docker \
    /data/jheffernan/clinical/bids /data/jheffernan/clinical/derivatives/fmriprep-local participant \
    --participant_label 14461002 \
    -t rest \
    --ignore slicetiming \
    --output-spaces MNI152NLin2009cAsym fsaverage \
    --dummy-scans 2 \
    --fs-license-file /opt/freesurfer/license.txt \
    --work-dir /data/jheffernan/clinical/work_dir2 \
    --resource-monitor \
    --write-graph \
    --notrack

This command completes without error. Here are the contents of the fmriprep/logs directory:

image
image.png852×59 3.51 KB

Should the resource-monitor log be in this directory or is there another location where it is written?

2

The resource monitor comes directly from nipype. The default file name for the log is resource_monitor.json. I suspect that it will also be in the base of the work dir that stores the outputs of all the nipype workflows.

3

I am not able to find the resource_monitor.json file. Here is a tree view with depth at 3 in the work dir:

image
image.png861×854 22.2 KB

Additionally, no files appear when I try to find the json file with this command: find . -iname resource_monitor.json