I tried to run fMRIPrep with fieldmap correction however, I experienced the following error(s):
FileNotFoundError: File path </data/sub-ER006/ses-1/fmap/sub-ER006_ses-1_acq-1_magnitude1.nii> does not exist, is a broken link, or it is not a file
ValueError: A fieldmap or phase-difference estimation type was found, but an anatomical reference (magnitude1 file) is missing
This is the related directory:
I know that sub-ER006_ses-1_acq-1_magnitude1.nii doesn’t exist (as per the first error), however I’m unsure on why its trying to locate a file under this name in the first place?
Many thanks in advance!