(My message got sent inadvertently)
the error is printed below:
/opt/singularity/bin/singularity run /data6/buchsbaum_lab/projects/fmriprep/fmriprep.img /data6/buchsbaum_lab/projects/ds101 out/ participant --participant_label sub-01
/usr/local/miniconda/lib/python3.6/site-packages/sklearn/cross_validation.py:44: DeprecationWarning: This module was deprecated in version 0.18 in favor of the model_selection module into which all the refactored classes and functions are moved. Also note that the interface of the new CV iterators are different from that of this module. This module will be removed in 0.20.
"This module will be removed in 0.20.", DeprecationWarning)
/usr/local/miniconda/lib/python3.6/site-packages/nipype/workflows/dmri/mrtrix/group_connectivity.py:16: UserWarning: cmp not installed
warnings.warn('cmp not installed')
Traceback (most recent call last):
File "/usr/local/miniconda/bin/fmriprep", line 11, in
load_entry_point('fmriprep==0.3.1', 'console_scripts', 'fmriprep')()
File "/usr/local/miniconda/lib/python3.6/site-packages/fmriprep/run_workflow.py", line 88, in main
File "/usr/local/miniconda/lib/python3.6/site-packages/fmriprep/run_workflow.py", line 164, in create_workflow
File "/usr/local/miniconda/lib/python3.6/site-packages/fmriprep/workflows/base.py", line 42, in base_workflow_enumerator
File "/usr/local/miniconda/lib/python3.6/site-packages/fmriprep/workflows/base.py", line 66, in base_workflow_generator
subject_id, task_id if task_id else ''))
Exception: No BOLD images found for participant sub-01 and task . All workflows require BOLD images.