Framewise displacement implementation with nilearn

1

Hi all,

I’m trying to make functional matrix with nilearn modules of Python.
I want to do frame censoring (high motion data removal) automatically.
I have tsv file of confound data since I performed preprocessing via fmriprep.

Do you have any idea to implement framewise displacement with nilearn module?

Thanks in advance.

2

Hi @rikaatgithub

You might want to check load_confounds: GitHub - SIMEXP/load_confounds: Load fMRIprep confounds in python
We are planning to have some integration within Nilearn at some point, but this is still ongoing work (see this issue: Integration of `load_confounds` to `nilearn` · Issue #2777 · nilearn/nilearn · GitHub).
Note that, in the mean time, it shouldn’t be too hard to integrate it in your workflow.

Let me know if this is helping or not!
Nicolas

3

@NicolasGensollen
Thank you so much for your quick reply.
So we can not implement framewise displacement without nilearn’s module for now…
I’ll try it!