Freesurfer 7.3.2 : unable to complete autorecon2

Software Support
1

I did recon-all stages separately, starting with autorecon1 which completed without issues. However i got stuck at autorecon2 with the following error

ERROR: cannot find or read transforms/talairach.m3z error: No such file or directory error: transforms/talairach.m3z: could not open transform

i’ve recently upgraded from freesurfer 7.2.0. I’ve never had such issues previously

2

You may get help here, but the FreeSurfer developers are responsive on the FreeSurfer mailing list.

3

Hello,
We are having the same error after trying to run autorecon2. Recon-all works when running all steps.

Did you figure out how to fix this?

Thanks!
-T

4

hi i’ve actually posted this issue in the freesurfer mailing list. I was told to append ‘-careg’ to the autorecon2 command and it worked for me.

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