I have tried to run fmriprep on Linux and have come up with the following error (file attached below). I’m unsure if I understand what it means, so I thought I’d ask here. Here are some background details that may be needed:
fmriprep-docker version: 21.0.2
Data is BIDS validated
Command: fmriprep-docker ~/Desktop/AJ_3 ~/Desktop/AJ3_Output participant --participant-label 01 --fs-license-file ~/Desktop/license.txt -w ~/Desktop/scratch
Run on Linux Server
If anyone knows how to solve this error, let me know! Thank you.
Yup my data is BIDS valid. Here is the recon file from my first post. The one from my first post was run on Windows, whereas the one that I have attached in this post is run on a virtual Linux server.