Greetings,
I have a script that is part of my analysis and it expects aparc+aseg.nii.gz because it passes it to AFNI for resampling. The freesurfer output from fmriprep is in .mgz format(i.e. aparc+aseg.mgz). Is there a way to have fmriprep output this file as .nii.gz or does it need to be converted using a different software?
Thank you,
Yonatan