I have an issue trying to convert a volumetric (.nii) file into surface (.mgh)
The command line we have used :
bbregister --s fsaverage --mov MNI152_T1_2mm_brain.nii --reg MNI152_T1_brain.dat --t1 --init-coreg
mri_vol2surf --file1.nii --reg MNI152_T1_brain.dat --hemi rh --o file1.mgh
The image is flipped between volumetric and surface
Someone has an idea about this issue ?
Thank you very much,
I would really appreciate any help,