FSL 1st level analysis with fmriprep output

Hi,

I am trying to perform first level analyses on fsl using the output from fmriprep. Which of the many output files that fmriprep provides should I use to register the subjects anatomical and functional scans? Very new to this so any advice will help.

Have a look at:

Thanks! However, I do not have nipype and figuring out this fitlins program seems like a lot of extra steps. I’m just looking for how to do this in fsl with fmriprep outputs.

http://mumfordbrainstats.tumblr.com/post/166054797696/feat-registration-workaround

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Thank you for the links.
I’ve tried using these methods on my fmriprep pre-processed data, but I’m struggeling with adding the right regressors.
When adding them according to the above example I get an error running spm’s 1st level design.
Any ideas as to what might go wrong?

Is this related to Spm_mat_file in spm Level1Design ?

Indeed. Seems that the problem was solved.
Thank you.

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