FSL 1st level analysis with fmriprep output


#1

Hi,

I am trying to perform first level analyses on fsl using the output from fmriprep. Which of the many output files that fmriprep provides should I use to register the subjects anatomical and functional scans? Very new to this so any advice will help.


#2

Have a look at:


#3

Thanks! However, I do not have nipype and figuring out this fitlins program seems like a lot of extra steps. I’m just looking for how to do this in fsl with fmriprep outputs.


#4

http://mumfordbrainstats.tumblr.com/post/166054797696/feat-registration-workaround