Summary of what happened:
Hello, everyone! I’m learning dual regression of the fsl course and keep getting an error.
Command used (and if a helper script was used, a link to the helper script or the command generated):
dual_regression groupICA15/melodic_IC 1 design/unpaired_ttest.mat design/unpaired_ttest.con 5000 groupICA15.dr `cat inputlist_new.txt`
Version:
fsl 6.0.7.6
Environment (Docker, Singularity, custom installation):
wsl ubuntu 20.04 & macOS 11
Data formatted according to a validatable standard? Please provide the output of the validator:
Relevant log outputs (up to 20 lines):
ired_ttest.con 5000 groupICA15zty.dr 'cat inputlist_new.txt' creating common mask
Error submitting job - Errors occured when running array task in shell plugin: Task 1 failed executing: /home/tianyu/fsl /bin/fslmaths CON_417/CON_417_resting.feat/filtered_func_data_clean_standard -Tstd -bin groupICA15zty.dr/mask_00000 -odt char () Task 2 failed executing: /home/tianyu/fsl/bin/fslmaths CON_425/CON_425_resting.feat/filtered_func_data_clean_standard -T std -bin groupICA15zty.dr/mask_00001 -odt char ()
Task 3 failed executing: /home/tianyu/fsl/bin/fslmaths CON_428/CON_428_resting.feat/filtered_func_data_clean_standard -T std -bin groupICA15zty.dr/mask_00002 -odt char ()
Task 4 failed executing: /home/tianyu/fsl/bin/fslmaths CON_430/CON_430_resting.feat/filtered_func_data_clean_standard -T std -bin groupICA15zty.dr/mask_00003 -odt char ()
Task 5 failed executing: /home/tianyu/fsl/bin/fslmaths CON_449/CON_449_resting.feat/filtered_func_data_clean_standard -T std -bin groupICA15zty.dr/mask_00004 -odt char ()
Task 6 failed executing: /home/tianyu/fsl/bin/fslmaths CON_453/CON_453_resting.feat/filtered_func_data_clean_standard -T std -bin groupICA15zty.dr/mask_00005 -odt char ()
Task 7 failed executing: /home/tianyu/fsl/bin/fslmaths TUM_401/TUM_401_resting.feat/filtered_func_data_clean_standard -T std -bin groupICA15zty.dr/mask_00006 -odt char ()
Task 9 failed executing: /home/tianyu/fsl/bin/fslmaths TUM_405/TUM_405_resting.feat/filtered_func_data_clean_standard -T std -bin groupICA15zty.dr/mask_00008 -odt char ()
Task 10 failed executing: /home/tianyu/fsl/bin/fslmaths TUM_421/TUM_421_resting.feat/filtered_func_data_clean_standard – Tstd -bin groupICA15zty.dr/mask_00009 -odt char ()
Task 11 failed executing: /home/tianyu/fsl/bin/fslmaths TUM_422/TUM_422_resting.feat/filtered_func_data_clean_standard - Tstd -bin groupICA15zty.dr/mask_00010 -odt char ()
and
usage: fsl_sub [-h] [-a ARCH] [-c COPROCESSOR]
[--coprocessor_multi COPROCESSOR_MULTI] [--coprocessor_class COPROCESSOR_CLASS] [--coprocessor_class_strict]
[--coprocessor_toolkit COPROCESSOR_TOOLKIT] [-F] [-j JOBHOLD] [--not_requeueable] [--array_hold ARRAY_HOLD] [-1 LOGDIR] [-m MAILOPTIONS] [-M MAILTO] [-n] [-N NAME] [-P PRIORITY] [-q QUEUE] [-r RESOURCE] [--delete_job DELETE_JOB] [--extra EXTRA] [-R GB] [-s PARALLELENV, THREADS]
[-t ARRAY_TASK] [--array_native ARRAY_NATIVE] [-X NUMBER] [--keep_jobscript] [--has_coprocessor COPROCESSOR_NAME] [--has_queues] [--project PROJECT] [-S] [-T MINUTES] [--show_config] [-v] [-v] [-z file]
fsl_sub: error: argument -j/--jobhold: expected one argument doing the dual regressions
usage: fsl_sub [-h] [-a ARCH] [-C COPROCESSOR]
[--coprocessor_multi COPROCESSOR_MULTI] [--coprocessor_class COPROCESSOR_CLASS] [--coprocessor_class_strict]
[--coprocessor_toolkit COPROCESSOR_TOOLKIT] [-F] [-j JOBHOLD] [--not_requeueable] [--array_hold ARRAY_HOLD] [-1 LOGDIR] [-m MAILOPTIONS] [-M MAILTO] [-n] [-N NAME] [-p PRIORITY] [-q QUEUE] [-r RESOURCE] [--delete_job DELETE_JOB] [--extra EXTRA] [-R GB] [-s PARALLELENV, THREADS] [-t ARRAY_TASK] [--array_native ARRAY_NATIVE] [-x NUMBER] [--keep_jobscript] [--has_coprocessor COPROCESSOR_NAME] [--has_queues] [--project PROJECT] [-S] [-T MINUTES]
