Hello, I am having a hard time downloading FSL on Mac OS M2 chip with the new Sony 14.3 software. I have seen previous posts with similar error:
ERROR occurred during installation!
This command returned an error: /Users/adefen/fsl/bin/conda env update
-p /Users/adefen/fsl -f /private/var/folders/w8/t8b01qxx1r9gsl5_mxj1dz_80000gn/T
/tmpctiwqaeq/fsl-6.0.7.7_macos-M1.yml
Removing failed installation directory /Users/adefen/fsl
FSL installation failed!
Please check the log file - it may contain some more information to
help you diagnose the problem: /Users/adefen/fsl_installation_20240206163222.log
The log file suggests there is some incompatibility issue, could be with mamba, I have tried Conda installer and the suggestion for installing it with : python fslinstaller.py --miniconda https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh but this just stays at 0%…
The log file displays these errors:
16:32:20 fslinstaller.py:1052: [stdout]: Solving environment: …working… failed
16:32:20 fslinstaller.py:1052: [stderr]:
16:32:20 fslinstaller.py:1052: [stderr]: LibMambaUnsatisfiableError: Encountered problems while solving:
16:32:20 fslinstaller.py:1052: [stderr]: - package openblas-0.3.23-openmp_hf78f355_0 is excluded by strict repo priority
16:32:20 fslinstaller.py:1052: [stderr]: - package fsl-mist-2111.5-h6087740_0 requires vtk >=9.2.6,<9.3.0a0, but none of the providers can be installed
16:32:20 fslinstaller.py:1052: [stderr]: - package boost-cpp-1.81.0-hf96b251_0 is excluded by strict repo priority
16:32:20 fslinstaller.py:1052: [stderr]: - package fsl-gps-2211.0-hcb8d3e5_1 requires boost-cpp >=1.81.0,<1.81.1.0a0, but none of the providers can be installed
16:32:20 fslinstaller.py:1052: [stderr]: - package wxpython-4.2.0-py310h1c18203_0 requires gettext >=0.21.1,<1.0a0, but none of the providers can be installed
16:32:20 fslinstaller.py:1052: [stderr]: - package openslide-python-v1.1.2-py310h8a0c2ca_1 requires openslide, but none of the providers can be installed
16:32:20 fslinstaller.py:1052: [stderr]: - package vtk-9.2.6-qt_py310h1234567_207 requires vtk-base 9.2.6 qt_py310h1234567_207, but none of the providers can be installed
16:32:20 fslinstaller.py:1052: [stderr]: - nothing provides __linux needed by fsleyes-1.10.0-pyh0d859eb_0
16:32:20 fslinstaller.py:1052: [stderr]: - package mamba-1.5.5-py310ha5d4528_0 requires python >=3.10,<3.11.0a0 *_cpython, but none of the providers can be installed
16:32:20 fslinstaller.py:1052: [stderr]: - package ciftilib-1.6.0-hcb8d3e5_0 requires libzlib >=1.2.13,<1.3.0a0, but none of the providers can be installed
16:32:20 fslinstaller.py:1052: [stderr]: - package libarchive-3.7.2-hcacb583_1 requires libxml2 >=2.12.2,<2.13.0a0, but none of the providers can be installed
16:32:20 fslinstaller.py:1052: [stderr]:
16:32:20 fslinstaller.py:1052: [stderr]:
16:32:20 fslinstaller.py: 206:
ERROR occurred during installation!
16:32:20 fslinstaller.py: 206: This command returned an error: /Users/adefen/fsl/bin/conda env update -p /Users/adefen/fsl -f /private/var/folders/w8/t8b01qxx1r9gsl5_mxj1dz_80000gn/T/tmpctiwqaeq/fsl-6.0.7.7_macos-M1.yml
16:32:20 fslinstaller.py:2710: File “/Users/adefen/Downloads/fslinstaller.py”, line 2702, in handle_error
yield
File “/Users/adefen/Downloads/fslinstaller.py”, line 2816, in main
install_fsl(ctx)
File “/Users/adefen/Downloads/fslinstaller.py”, line 2096, in install_fsl
ctx.run(Process.monitor_progress, cmd, env={‘CONDARC’ : condarc},
File “/Users/adefen/Downloads/fslinstaller.py”, line 1553, in run
return process_func(admin=self.need_admin,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File “/Users/adefen/Downloads/fslinstaller.py”, line 1024, in monitor_progress
raise RuntimeError('This command returned ’
16:32:20 fslinstaller.py:2713: Environment variables:
16:32:20 fslinstaller.py:2715: __CFBundleIdentifier=com.apple.Terminal
16:32:20 fslinstaller.py:2715: TMPDIR=/var/folders/w8/t8b01qxx1r9gsl5_mxj1dz_80000gn/T/
16:32:20 fslinstaller.py:2715: XPC_FLAGS=0x0
16:32:20 fslinstaller.py:2715: TERM=xterm-256color
16:32:20 fslinstaller.py:2715: DISPLAY=/private/tmp/com.apple.launchd.ndbNp2PX6Y/org.xquartz:0
16:32:20 fslinstaller.py:2715: SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.BZ1EbgdIwU/Listeners
16:32:20 fslinstaller.py:2715: XPC_SERVICE_NAME=0
16:32:20 fslinstaller.py:2715: TERM_PROGRAM=Apple_Terminal
16:32:20 fslinstaller.py:2715: TERM_PROGRAM_VERSION=453
16:32:20 fslinstaller.py:2715: TERM_SESSION_ID=27CBC7E3-878A-42CD-8A24-B5F60E2014EE
16:32:20 fslinstaller.py:2715: SHELL=/bin/zsh
16:32:20 fslinstaller.py:2715: HOME=/Users/adefen
16:32:20 fslinstaller.py:2715: LOGNAME=adefen
16:32:20 fslinstaller.py:2715: USER=adefen
16:32:20 fslinstaller.py:2715: PATH=/Users/adefen/anaconda3/bin:/Users/adefen/anaconda3/condabin:/Library/Frameworks/Python.framework/Versions/2.7/bin:/Library/Frameworks/Python.framework/Versions/3.12/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/opt/X11/bin
16:32:20 fslinstaller.py:2715: SHLVL=1
16:32:20 fslinstaller.py:2715: PWD=/Users/adefen/Downloads
16:32:20 fslinstaller.py:2715: OLDPWD=/Users/adefen
16:32:20 fslinstaller.py:2715: CONDA_EXE=/Users/adefen/anaconda3/bin/conda
16:32:20 fslinstaller.py:2715: _CE_M=
16:32:20 fslinstaller.py:2715: _CE_CONDA=
16:32:20 fslinstaller.py:2715: CONDA_PYTHON_EXE=/Users/adefen/anaconda3/bin/python
16:32:20 fslinstaller.py:2715: CONDA_SHLVL=1
16:32:20 fslinstaller.py:2715: CONDA_PREFIX=/Users/adefen/anaconda3
16:32:20 fslinstaller.py:2715: CONDA_DEFAULT_ENV=base
16:32:20 fslinstaller.py:2715: CONDA_PROMPT_MODIFIER=(base)
16:32:20 fslinstaller.py:2715: LC_CTYPE=UTF-8
16:32:20 fslinstaller.py:2715: _=/Users/adefen/anaconda3/bin/python
16:32:20 fslinstaller.py: 206: Removing failed installation directory /Users/adefen/fsl
16:32:20 fslinstaller.py: 873: Running rm -r /Users/adefen/fsl [as admin: False]