Functional connectivity - using fMRIPrep preprocessed data with CPAC


Do you have any ideas on how to modify the YAML pipeline config files in C-PAC to use FMRIPREP output, rather than C-PAC doing the pre-processing? I am using C-PAC BIDS in a docker container.
Any information greatly appreciated. Thank you.

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Standarized Resting State processing with fmriprep

It’s been a long time since I last used CPAC, but I believe it allows you to place the specific files at specific locations of the input tree so that it doesn’t run all the steps through that point of preprocessing.

I would suggest you post this question in their repo an ask them to reply here to reach a broader audience.

As regards how to interpret fMRIPrep outputs and reuse them, our latest preprint might be of help.