new to a lot of this docker and nipy ecosystem, so bear with me.
i’m running an m1 mac trying to get MRIQC to work on a single BIDS-validated subject, particularly interested in structural IQMs.
while that’s running, in a conda environment in the terminal i run:
docker run -it nipreps/mriqc:latest --version
then i run the following command which errors out, also saying i’m using a different version of MRIQC.
Command used (and if a helper script was used, a link to the helper script or the command generated):
docker run -it --rm \ -v /Users/storrisi/Desktop/BIDS_learning/20221119_HEMI_manualBids_4mriqc:/data:ro \ -v /Users/storrisi/Desktop/BIDS_learning/20221119_HEMI_manualBids_4mriqc/MRI_QC_Out:/out \ poldracklab/mriqc:latest /data /out participant --participant_label 02
i’ve installed docker desktop version 4.20.1
WARNING: The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested You are using MRIQC v0.16.1+81.g0093e62.dirty, and a newer version is available: 23.0.1. 230611-20:38:59,217 cli IMPORTANT: Running MRIQC version 0.16.1+81.g0093e62.dirty: * BIDS dataset path: /data. * Output folder: /out. * Analysis levels: ['participant']. 230611-20:39:01,924 nipype.utils WARNING: A newer version (1.8.4) of nipy/nipype is available. You are using 1.6.1 230611-20:39:09,704 nipype.utils WARNING: A newer version (1.8.4) of nipy/nipype is available. You are using 1.6.1 Process Process-2: Traceback (most recent call last): File "/opt/conda/lib/python3.8/multiprocessing/process.py", line 315, in _bootstrap self.run() File "/opt/conda/lib/python3.8/multiprocessing/process.py", line 108, in run self._target(*self._args, **self._kwargs) File "/opt/conda/lib/python3.8/site-packages/mriqc/cli/workflow.py", line 21, in build_workflow retval["workflow"] = init_mriqc_wf() File "/opt/conda/lib/python3.8/site-packages/mriqc/workflows/core.py", line 22, in init_mriqc_wf workflow.add_nodes([fmri_qc_workflow()]) File "/opt/conda/lib/python3.8/site-packages/mriqc/workflows/functional.py", line 43, in fmri_qc_workflow from niworkflows.interfaces.utils import SanitizeImage ModuleNotFoundError: No module named 'niworkflows.interfaces.utils'
I still get that error even after, while inside the conda environment, i’ve “pip install niworkflows”. the output below also states that i’m using
MRIQC v0.16.1+81.g0093e62.dirty. what might be going on? i apologize if this is a simple path or environment issue or if i maybe even installed the wrong version of mriqc. and of course let me know if you need any more info. THANKS!