HCP 7 Tesla – what is correct directory using curl?

Philipp · January 27, 2024, 11:33am

I would like to download the rest and movie 7T HCP runs of the fully preprocessed plus ICA FIX version (a paradigmatic file name of the files that I would like to download is “rfMRI_REST1_7T_PA_hp2000_clean.nii.gz”)

I spend around five hours now trying to figure out and testing what the correct path for the file that I aim to download is, without success.

Here is an example that shows how I try to download a file:

curl -u my_user_name:my_password \
https://db.humanconnectome.org/data/projects/HCP_1200/subjects/100610/experiments/100610_7T/resources/rfMRI_REST1_PA_FIX/files/100610_rfMRI_REST1_7T_PA_2000_MSMSulc.59k.matlab.log \
-o 100610_rfMRI_REST1_7T_PA_2000_MSMSulc.59k.matlab.log

In this example above, the matlab.log file will be downloaded without any problems, so all good.

Now, using the same appraoch for the denoised ICA FIX functional run:

curl -u my_user_name:my_password \
https://db.humanconnectome.org/data/projects/HCP_1200/subjects/100610/experiments/100610_7T/resources/rfMRI_REST1_PA_FIX/files/rfMRI_REST1_7T_PA/rfMRI_REST1_7T_PA_hp2000_clean.nii.gz \
-o rfMRI_REST1_7T_PA_hp2000_clean.nii.gz

When I open the downloaded file with a texteditor it states " HTTP Status 404 - Unable to find catalog entry for given uri."

Somehow the directory is wrong. However, following the directory structure that one can also access to download the file manually on the HCP webpage, the directory should be correct.

Following the “HCP_S1200_Release_Appendix_III 7T DiffBed.pdf”, the desired file “rfMRI_REST1_7T_PA_hp2000_clean.nii.gz” should be located under the following path:

“…MNINonLinear/Results/rfMRI_REST1_7T_PA/ RestingStateStats/rfMRI_REST1_7T_PA_hp2000.ica/”.

Trying the same approach as shown above with this path also does not work and yields the same problem.

https://db.humanconnectome.org/data/projects/HCP_1200/subjects/100610/experiments/100610_7T/resources/MNINonLinear/Results/rfMRI_REST1_7T_PA/ RestingStateStats/rfMRI_REST1_7T_PA_hp2000.ica/rfMRI_REST1_7T_PA_hp2000_clean.nii.gz \
-o rfMRI_REST1_7T_PA_hp2000_clean.nii.gz

Does anyone know what the correct directory/path for the cleaned/denoised 7T HCP rest and movie runs really is?

Steven · January 27, 2024, 2:24pm

Hi,@Philipp,

You can try using datalad and installing the version here: GitHub - datalad-datasets/human-connectome-project-openaccess: WU-Minn HCP1200 Data: 3T/7T MR scans from young healthy adults twins and non-twin siblings (ages 22-35) [T1w, T2w, resting-state and task fMRI, high angular resolution dMRI]. In my distribution I see the following files:

tree /PATH/TO/HCP1200/100610/MNINonLinear/Results/rfMRI_REST1_7T_PA/
/PATH/TO/HCP1200/100610/MNINonLinear/Results/rfMRI_REST1_7T_PA/
├── 100610_rfMRI_REST1_7T_PA_ICA_Classification_dualscreen.scene -> ../../.git/annex/objects/JG/8Z/MD5E-s2031001--49769c57fe6d630d7edffeea1eb05cb5/MD5E-s2031001--49769c57fe6d630d7edffeea1eb05cb5
├── 100610_rfMRI_REST1_7T_PA_ICA_Classification_singlescreen.scene -> ../../.git/annex/objects/wp/qw/MD5E-s2017954--648eec5807665876f0e6652b043c1dee/MD5E-s2017954--648eec5807665876f0e6652b043c1dee
├── brainmask_fs.1.60.nii.gz -> ../../.git/annex/objects/Xv/PQ/MD5E-s41422--0a56c935a2bce9072ff611061e223918.nii.gz/MD5E-s41422--0a56c935a2bce9072ff611061e223918.nii.gz
├── Movement_AbsoluteRMS_mean.txt -> ../../.git/annex/objects/k4/zz/MD5E-s9--51662a7a1e8b09dc6ae3e9f1a3d40d8a.txt/MD5E-s9--51662a7a1e8b09dc6ae3e9f1a3d40d8a.txt
├── Movement_AbsoluteRMS.txt -> ../../.git/annex/objects/vP/4f/MD5E-s8007--178b19ecca1e7efc7e71e42ad5c3973c.txt/MD5E-s8007--178b19ecca1e7efc7e71e42ad5c3973c.txt
├── Movement_Regressors_dt.txt -> ../../.git/annex/objects/48/43/MD5E-s119700--e093726553b771321507bab9cc2b8d26.txt/MD5E-s119700--e093726553b771321507bab9cc2b8d26.txt
├── Movement_Regressors.txt -> ../../.git/annex/objects/73/Vx/MD5E-s119700--da2e582975ba4b1156582dee09f9de20.txt/MD5E-s119700--da2e582975ba4b1156582dee09f9de20.txt
├── Movement_RelativeRMS_mean.txt -> ../../.git/annex/objects/4W/00/MD5E-s8--45d8ada5a059ab1f766adca15f3986a4.txt/MD5E-s8--45d8ada5a059ab1f766adca15f3986a4.txt
├── Movement_RelativeRMS.txt -> ../../.git/annex/objects/m2/47/MD5E-s8212--0e405957c6c5562422a75eb73d31dd5d.txt/MD5E-s8212--0e405957c6c5562422a75eb73d31dd5d.txt
├── ReclassifyAsNoise.txt -> ../../.git/annex/objects/6X/8m/MD5E-s0--d41d8cd98f00b204e9800998ecf8427e.txt/MD5E-s0--d41d8cd98f00b204e9800998ecf8427e.txt
├── ReclassifyAsSignal.txt -> ../../.git/annex/objects/6X/8m/MD5E-s0--d41d8cd98f00b204e9800998ecf8427e.txt/MD5E-s0--d41d8cd98f00b204e9800998ecf8427e.txt
├── RestingStateStats
│   ├── rfMRI_REST1_7T_PA_Atlas_1-2_OrigTCS-HighPassTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/6X/VX/MD5E-s79458--aca38425497e3ac7ff8239e27378c61c.png/MD5E-s79458--aca38425497e3ac7ff8239e27378c61c.png
│   ├── rfMRI_REST1_7T_PA_Atlas_1-2_OrigTCS-HighPassTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/GF/JW/MD5E-s80733--97f67db93ad4a6620d41ae346bf7243e.png/MD5E-s80733--97f67db93ad4a6620d41ae346bf7243e.png
│   ├── rfMRI_REST1_7T_PA_Atlas_1-5_OrigTCS-UnstructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/PK/MG/MD5E-s1171373--0817461c921554ab7d6cb10f505bae46.png/MD5E-s1171373--0817461c921554ab7d6cb10f505bae46.png
│   ├── rfMRI_REST1_7T_PA_Atlas_1-5_OrigTCS-UnstructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/0w/jz/MD5E-s1632722--8d2961794f4a3fde0549634334f55455.png/MD5E-s1632722--8d2961794f4a3fde0549634334f55455.png
│   ├── rfMRI_REST1_7T_PA_Atlas_1_OrigTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/Mk/xp/MD5E-s882600--7eb8e4fef9526eca5542fd65607612d7.png/MD5E-s882600--7eb8e4fef9526eca5542fd65607612d7.png
│   ├── rfMRI_REST1_7T_PA_Atlas_1_OrigTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/7q/k0/MD5E-s1886269--ee7b71bf06e7feeb219da47d54c4829f.png/MD5E-s1886269--ee7b71bf06e7feeb219da47d54c4829f.png
│   ├── rfMRI_REST1_7T_PA_Atlas_2-3_HighPassTCS-PostMotionTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/4q/6J/MD5E-s1648993--67281bb2a3f9ba9e96253dee0fdb46ca.png/MD5E-s1648993--67281bb2a3f9ba9e96253dee0fdb46ca.png
│   ├── rfMRI_REST1_7T_PA_Atlas_2-3_HighPassTCS-PostMotionTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/M7/Zw/MD5E-s1651156--81b26201a45e948820ce2c433a56353e.png/MD5E-s1651156--81b26201a45e948820ce2c433a56353e.png
│   ├── rfMRI_REST1_7T_PA_Atlas_2-5_HighPassTCS-UnstructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/60/2P/MD5E-s1254913--b4a08508585db4dc6fc5525b029b366f.png/MD5E-s1254913--b4a08508585db4dc6fc5525b029b366f.png
│   ├── rfMRI_REST1_7T_PA_Atlas_2-5_HighPassTCS-UnstructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/vF/35/MD5E-s1736895--5fffb82f6c09aecc5f7065be7121f4dc.png/MD5E-s1736895--5fffb82f6c09aecc5f7065be7121f4dc.png
│   ├── rfMRI_REST1_7T_PA_Atlas_2_HighPassTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/Xj/gj/MD5E-s906061--509875733987d4148a3edc674fe63f08.png/MD5E-s906061--509875733987d4148a3edc674fe63f08.png
│   ├── rfMRI_REST1_7T_PA_Atlas_2_HighPassTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/G8/PX/MD5E-s1947895--0a7a6773d33a385d6d2b3d7ca6619f32.png/MD5E-s1947895--0a7a6773d33a385d6d2b3d7ca6619f32.png
│   ├── rfMRI_REST1_7T_PA_Atlas_3-4_PostMotionTCS-CleanedTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/Gg/7v/MD5E-s1916109--2b4e8d56d9056abd4c2719b515312b96.png/MD5E-s1916109--2b4e8d56d9056abd4c2719b515312b96.png
│   ├── rfMRI_REST1_7T_PA_Atlas_3-4_PostMotionTCS-CleanedTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/k1/Kj/MD5E-s1913359--78b9738fdea22909c8060612379df06e.png/MD5E-s1913359--78b9738fdea22909c8060612379df06e.png
│   ├── rfMRI_REST1_7T_PA_Atlas_3-5_PostMotionTCS-UnstructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/Fq/1F/MD5E-s1744548--85f2b116fae1918538ed218796c481b4.png/MD5E-s1744548--85f2b116fae1918538ed218796c481b4.png
│   ├── rfMRI_REST1_7T_PA_Atlas_3-5_PostMotionTCS-UnstructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/Fm/1F/MD5E-s1770550--83833c1767448dd09e5137c23a129f90.png/MD5E-s1770550--83833c1767448dd09e5137c23a129f90.png
│   ├── rfMRI_REST1_7T_PA_Atlas_3_PostMotionTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/3F/kx/MD5E-s949338--0de0179b8805ae15ea53e16d7cd0de63.png/MD5E-s949338--0de0179b8805ae15ea53e16d7cd0de63.png
│   ├── rfMRI_REST1_7T_PA_Atlas_3_PostMotionTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/KP/43/MD5E-s1986658--510e9322aa9f747ead2ec01e9d2e7b13.png/MD5E-s1986658--510e9322aa9f747ead2ec01e9d2e7b13.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4-5_CleanedTCS-UnstructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/gZ/Fw/MD5E-s964252--b03be923a5b3cd72117e6446cbff830b.png/MD5E-s964252--b03be923a5b3cd72117e6446cbff830b.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4-5_CleanedTCS-UnstructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/Qk/pM/MD5E-s1065648--38884e14492944abdf84d48bd61ee739.png/MD5E-s1065648--38884e14492944abdf84d48bd61ee739.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4-6_CleanedTCS-WMCleanedTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/Gz/mW/MD5E-s59552--cb90b79dfcf2e88ca2653b8f73922dfe.png/MD5E-s59552--cb90b79dfcf2e88ca2653b8f73922dfe.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4-6_CleanedTCS-WMCleanedTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/6x/mP/MD5E-s90671--be9bda41066917449ce22d26f733727b.png/MD5E-s90671--be9bda41066917449ce22d26f733727b.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4-7_CleanedTCS-CSFCleanedTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/Zm/26/MD5E-s88035--59826e415a08793ca139540a1d740701.png/MD5E-s88035--59826e415a08793ca139540a1d740701.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4-7_CleanedTCS-CSFCleanedTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/m5/f0/MD5E-s154872--03251dbcae68f0f800fe1d941161352e.png/MD5E-s154872--03251dbcae68f0f800fe1d941161352e.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4-8_CleanedTCS-WMCSFCleanedTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/M9/ZJ/MD5E-s621337--8ef2b38c7fc85dbf5a21f1c9ea45006f.png/MD5E-s621337--8ef2b38c7fc85dbf5a21f1c9ea45006f.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4-8_CleanedTCS-WMCSFCleanedTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/F6/wK/MD5E-s1282081--466803cbbb14f7bccc0434869dd3e575.png/MD5E-s1282081--466803cbbb14f7bccc0434869dd3e575.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4_CleanedTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/7g/xF/MD5E-s1006617--d7741dc8c52e6e0c40adc9de50b15aa8.png/MD5E-s1006617--d7741dc8c52e6e0c40adc9de50b15aa8.png
│   ├── rfMRI_REST1_7T_PA_Atlas_4_CleanedTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/4x/Jw/MD5E-s1983619--47986ab0b75f8ee2dd1712372db3b70a.png/MD5E-s1983619--47986ab0b75f8ee2dd1712372db3b70a.png
│   ├── rfMRI_REST1_7T_PA_Atlas_5_UnstructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/Pf/Q3/MD5E-s973209--5f16ce24bd3db9d3d7d74cee25e993f0.png/MD5E-s973209--5f16ce24bd3db9d3d7d74cee25e993f0.png
│   ├── rfMRI_REST1_7T_PA_Atlas_5_UnstructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/zg/Fw/MD5E-s2032522--00acf67d82c34cc55cb0419d5996f2a8.png/MD5E-s2032522--00acf67d82c34cc55cb0419d5996f2a8.png
│   ├── rfMRI_REST1_7T_PA_Atlas_6-5_WMCleanedTCS-UnstructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/pQ/QJ/MD5E-s968046--d3c534e5fa331ff7c55c315798319463.png/MD5E-s968046--d3c534e5fa331ff7c55c315798319463.png
│   ├── rfMRI_REST1_7T_PA_Atlas_6-5_WMCleanedTCS-UnstructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/v1/Qv/MD5E-s1077330--ed8ff71b2442e4394742c6adbdb7f47a.png/MD5E-s1077330--ed8ff71b2442e4394742c6adbdb7f47a.png
│   ├── rfMRI_REST1_7T_PA_Atlas_6_WMCleanedTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/kJ/K3/MD5E-s995377--46cb92e4f0fe619ba30ba1fef9126925.png/MD5E-s995377--46cb92e4f0fe619ba30ba1fef9126925.png
│   ├── rfMRI_REST1_7T_PA_Atlas_6_WMCleanedTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/fk/j9/MD5E-s1984563--e4e318ea81ec88867a700f4fb78b886d.png/MD5E-s1984563--e4e318ea81ec88867a700f4fb78b886d.png
│   ├── rfMRI_REST1_7T_PA_Atlas_7-5_CSFCleanedTCS-UnstructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/8V/Gp/MD5E-s963120--f89eff8ffc99a13510d8ef9ba18b2183.png/MD5E-s963120--f89eff8ffc99a13510d8ef9ba18b2183.png
│   ├── rfMRI_REST1_7T_PA_Atlas_7-5_CSFCleanedTCS-UnstructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/G3/jq/MD5E-s1092629--dd176e8087cf7c8b202eb02db8ebfa2c.png/MD5E-s1092629--dd176e8087cf7c8b202eb02db8ebfa2c.png
│   ├── rfMRI_REST1_7T_PA_Atlas_7_CSFCleanedTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/0z/P9/MD5E-s993190--964740d936c910c0dd96860613734468.png/MD5E-s993190--964740d936c910c0dd96860613734468.png
│   ├── rfMRI_REST1_7T_PA_Atlas_7_CSFCleanedTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/Zg/Mf/MD5E-s1988571--8976aebbe108e99f4ba329b29e8197d0.png/MD5E-s1988571--8976aebbe108e99f4ba329b29e8197d0.png
│   ├── rfMRI_REST1_7T_PA_Atlas_8-5_WMCSFCleanedTCS-UnstructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/W5/xw/MD5E-s971860--642f0f3768eb10d1eaf5db301e3aa3e5.png/MD5E-s971860--642f0f3768eb10d1eaf5db301e3aa3e5.png
│   ├── rfMRI_REST1_7T_PA_Atlas_8-5_WMCSFCleanedTCS-UnstructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/Zz/vP/MD5E-s1104178--beb2c426143c89663d39e2dd88c543fc.png/MD5E-s1104178--beb2c426143c89663d39e2dd88c543fc.png
│   ├── rfMRI_REST1_7T_PA_Atlas_8_WMCSFCleanedTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/3q/zM/MD5E-s988134--7055ffeaa83d5f17430547949311e927.png/MD5E-s988134--7055ffeaa83d5f17430547949311e927.png
│   ├── rfMRI_REST1_7T_PA_Atlas_8_WMCSFCleanedTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/KV/xM/MD5E-s1987405--8fbe9a880b030b6309223bf2e47102dc.png/MD5E-s1987405--8fbe9a880b030b6309223bf2e47102dc.png
│   ├── rfMRI_REST1_7T_PA_Atlas_9_StructNoiseTCS_QC_Summary_Plot.png -> ../../../.git/annex/objects/zZ/v6/MD5E-s1916243--036756d8f25d4bcdfdefae600de9606e.png/MD5E-s1916243--036756d8f25d4bcdfdefae600de9606e.png
│   ├── rfMRI_REST1_7T_PA_Atlas_9_StructNoiseTCS_QC_Summary_Plot_z.png -> ../../../.git/annex/objects/38/px/MD5E-s1913494--2dc358e6b0fb717c47100d1bb25f7458.png/MD5E-s1913494--2dc358e6b0fb717c47100d1bb25f7458.png
│   ├── rfMRI_REST1_7T_PA_Atlas_CleanedCSFtc.txt -> ../../../.git/annex/objects/Zx/Zj/MD5E-s6641--eadce810622bf470bb399485f9d6b449.txt/MD5E-s6641--eadce810622bf470bb399485f9d6b449.txt
│   ├── rfMRI_REST1_7T_PA_Atlas_CleanedMGT.txt -> ../../../.git/annex/objects/7z/v1/MD5E-s6721--3790dd3bc83fbf9e129743803d84d442.txt/MD5E-s6721--3790dd3bc83fbf9e129743803d84d442.txt
│   ├── rfMRI_REST1_7T_PA_Atlas_CleanedWMtc.txt -> ../../../.git/annex/objects/jP/xF/MD5E-s6783--54ce9726a8c0d93b9d929f6847604911.txt/MD5E-s6783--54ce9726a8c0d93b9d929f6847604911.txt
│   ├── rfMRI_REST1_7T_PA_Atlas_HighPassMGT.txt -> ../../../.git/annex/objects/PV/P2/MD5E-s6656--3cd36ff9e2814f0ab55b9f44b025c5d3.txt/MD5E-s6656--3cd36ff9e2814f0ab55b9f44b025c5d3.txt
│   ├── rfMRI_REST1_7T_PA_Atlas_NoiseMGT.txt -> ../../../.git/annex/objects/pm/38/MD5E-s6681--5d4d2f0c28ae63315590437fbd17c5ba.txt/MD5E-s6681--5d4d2f0c28ae63315590437fbd17c5ba.txt
│   ├── rfMRI_REST1_7T_PA_Atlas_OrigMGT.txt -> ../../../.git/annex/objects/09/5Z/MD5E-s6696--ddb4f0c4d3132f73d84edaff0a46506e.txt/MD5E-s6696--ddb4f0c4d3132f73d84edaff0a46506e.txt
│   ├── rfMRI_REST1_7T_PA_Atlas_PostMotionMGT.txt -> ../../../.git/annex/objects/2v/3Z/MD5E-s6678--5079cd351d22db151b61fe9c6883a60c.txt/MD5E-s6678--5079cd351d22db151b61fe9c6883a60c.txt
│   └── rfMRI_REST1_7T_PA_Atlas_UnstructNoiseMGT.txt -> ../../../.git/annex/objects/pV/57/MD5E-s6917--0e73fc056a7421aee28b39bac24bbab6.txt/MD5E-s6917--0e73fc056a7421aee28b39bac24bbab6.txt
├── rfMRI_REST1_7T_PA_Atlas_1.6mm.dtseries.nii -> ../../.git/annex/objects/Wm/zq/MD5E-s614983040--030c83e78a819638d855c185f26143d7.nii/MD5E-s614983040--030c83e78a819638d855c185f26143d7.nii
├── rfMRI_REST1_7T_PA_Atlas_1.6mm_hp2000_clean.dtseries.nii -> ../../.git/annex/objects/wj/ff/MD5E-s614978096--cd88da0c3fe70eb78c4bcb10f074afd3.nii/MD5E-s614978096--cd88da0c3fe70eb78c4bcb10f074afd3.nii
├── rfMRI_REST1_7T_PA_Atlas_1.6mm_MSMAll.dtseries.nii -> ../../.git/annex/objects/kM/Qm/MD5E-s614983072--8f030a68bb4e98c1f394c404fe8b6106.nii/MD5E-s614983072--8f030a68bb4e98c1f394c404fe8b6106.nii
├── rfMRI_REST1_7T_PA_Atlas_1.6mm_MSMAll_hp2000_clean.dtseries.nii -> ../../.git/annex/objects/qg/p5/MD5E-s614978080--8069da99c6b50bd5164d3a7829f308c3.nii/MD5E-s614978080--8069da99c6b50bd5164d3a7829f308c3.nii
├── rfMRI_REST1_7T_PA_Atlas.dtseries.nii -> ../../.git/annex/objects/m4/pJ/MD5E-s329249504--77d65e813b5fede2fea2a11f2c600722.nii/MD5E-s329249504--77d65e813b5fede2fea2a11f2c600722.nii
├── rfMRI_REST1_7T_PA_Atlas_hp2000_clean.dtseries.nii -> ../../.git/annex/objects/P2/q0/MD5E-s329245984--35710992f2b64c9e332791d13d0431bd.nii/MD5E-s329245984--35710992f2b64c9e332791d13d0431bd.nii
├── rfMRI_REST1_7T_PA_Atlas_hp2000_clean_vn.dscalar.nii -> ../../.git/annex/objects/gk/GV/MD5E-s996200--5e3cf18c40e7ba432f58ca5bae35e647.nii/MD5E-s996200--5e3cf18c40e7ba432f58ca5bae35e647.nii
├── rfMRI_REST1_7T_PA_Atlas_MSMAll.dtseries.nii -> ../../.git/annex/objects/qq/z4/MD5E-s329249536--48f9f2eeae917405e5507a04b3ce2cfb.nii/MD5E-s329249536--48f9f2eeae917405e5507a04b3ce2cfb.nii
├── rfMRI_REST1_7T_PA_Atlas_MSMAll_hp2000_clean.dtseries.nii -> ../../.git/annex/objects/j4/KM/MD5E-s329246016--189c584727c66feecb8c0ca63ffed497.nii/MD5E-s329246016--189c584727c66feecb8c0ca63ffed497.nii
├── rfMRI_REST1_7T_PA_Atlas_stats.dscalar.nii -> ../../.git/annex/objects/pJ/8W/MD5E-s24129872--c261021aa5231551b917fa4d6080ec20.nii/MD5E-s24129872--c261021aa5231551b917fa4d6080ec20.nii
├── rfMRI_REST1_7T_PA_Atlas_stats.txt -> ../../.git/annex/objects/K6/qk/MD5E-s1726--0dfa3e1d745a74f47e5e1976f662c6ea.txt/MD5E-s1726--0dfa3e1d745a74f47e5e1976f662c6ea.txt
├── rfMRI_REST1_7T_PA_CSF.txt -> ../../.git/annex/objects/2z/jg/MD5E-s12508--19f8697528297ae996f3bcfee2594d0d.txt/MD5E-s12508--19f8697528297ae996f3bcfee2594d0d.txt
├── rfMRI_REST1_7T_PA_dropouts.nii.gz -> ../../.git/annex/objects/X6/MX/MD5E-s1767482--8638edea564bd395b08739b5ac680711.nii.gz/MD5E-s1767482--8638edea564bd395b08739b5ac680711.nii.gz
├── rfMRI_REST1_7T_PA_hp2000_clean.nii.gz -> ../../.git/annex/objects/4z/Vv/MD5E-s1550603109--baf5e3f5990f2eee66c31bd7ec0ab4d2.nii.gz/MD5E-s1550603109--baf5e3f5990f2eee66c31bd7ec0ab4d2.nii.gz
├── rfMRI_REST1_7T_PA_hp2000.ica
│   ├── filtered_func_data.ica
│   │   ├── eigenvalues_percent -> ../../../../.git/annex/objects/Jw/vJ/MD5E-s12477--89e2505f495f2d4acad261c7e1b06c6e/MD5E-s12477--89e2505f495f2d4acad261c7e1b06c6e
│   │   ├── log.txt -> ../../../../.git/annex/objects/XJ/Q9/MD5E-s72937--d7f613aa2872463ec5621a8b2ae900fa.txt/MD5E-s72937--d7f613aa2872463ec5621a8b2ae900fa.txt
│   │   ├── melodic_FTmix -> ../../../../.git/annex/objects/fK/pV/MD5E-s749028--d46f54ee16004c44e182bebb5f8308cb/MD5E-s749028--d46f54ee16004c44e182bebb5f8308cb
│   │   ├── melodic_FTmix.sdseries.nii -> ../../../../.git/annex/objects/Mm/69/MD5E-s246632--23baddbf7ea7a9efd1c18db4841b2b7d.nii/MD5E-s246632--23baddbf7ea7a9efd1c18db4841b2b7d.nii
│   │   ├── melodic_IC.nii.gz -> ../../../../.git/annex/objects/GJ/wJ/MD5E-s222193669--e3ba087ee3cbe26a31d450afb3279beb.nii.gz/MD5E-s222193669--e3ba087ee3cbe26a31d450afb3279beb.nii.gz
│   │   ├── melodic_ICstats -> ../../../../.git/annex/objects/MV/ZF/MD5E-s5512--af93fba36e6dcfaa5469f8040921fc0d/MD5E-s5512--af93fba36e6dcfaa5469f8040921fc0d
│   │   ├── melodic_mix -> ../../../../.git/annex/objects/p9/69/MD5E-s1644900--f1089fe596663e860485d86c26c39783/MD5E-s1644900--f1089fe596663e860485d86c26c39783
│   │   ├── melodic_mix.sdseries.nii -> ../../../../.git/annex/objects/vJ/ZW/MD5E-s478832--054f29c5883407297de2f9d1d0e5b3db.nii/MD5E-s478832--054f29c5883407297de2f9d1d0e5b3db.nii
│   │   ├── melodic_oIC.dscalar.nii -> ../../../../.git/annex/objects/4F/4V/MD5E-s47745512--9c182545cefe75fd2e78333c446da791.nii/MD5E-s47745512--9c182545cefe75fd2e78333c446da791.nii
│   │   ├── melodic_oIC.nii.gz -> ../../../../.git/annex/objects/v2/77/MD5E-s221971736--79be723abc1a50fcd09e645becbafcd0.nii.gz/MD5E-s221971736--79be723abc1a50fcd09e645becbafcd0.nii.gz
│   │   ├── melodic_oIC_vol.dscalar.nii -> ../../../../.git/annex/objects/Wp/82/MD5E-s236071060--7e74a79bbe3df9e29ff6ef318cdbba45.nii/MD5E-s236071060--7e74a79bbe3df9e29ff6ef318cdbba45.nii
│   │   ├── melodic_Tmodes -> ../../../../.git/annex/objects/p9/69/MD5E-s1644900--f1089fe596663e860485d86c26c39783/MD5E-s1644900--f1089fe596663e860485d86c26c39783

Best,
Steven

Philipp · January 28, 2024, 10:00am

Hello Steven,

thank you for your help, I will try it with datalad then.

By the way, the issue with downloading specific HCP files via curl or wget is a bit strange. I can download any file from the HCP dataset base, be it raw data, preprocessed data, single associated files, etc. Just the ICA-FIX cleaned up volume NIFTI files are not possible to download. However, the files are clearly there, as one can download them manually for each single subject from the HCP webpage. The issue also occured for a friend of mine on another computer.

Steven · January 28, 2024, 3:29pm

That might be something to raise with the HCP project team.