Hi NeuroStars Community,
For days I have been wrestling to get heudiconv to convert all my data into the BIDS structure. This works well for the T1 (anat), DTI (dwi), and fieldmap (fmap) images, but somehow there is no conversion of the functional images (bold and sbref) into a func folder.
The heuristics file is created, convertall.py, where the correct BIDS folders are referenced in the create_key fields I think.
One other peculiarity I encountered: For DWI, I have a second image file, which are six b0 volumes. Although I specified this as a criterion for this scan [if(‘diff_PA’ in s.protocol_name) and (s.dim4 == 6)],
it isn’t created, although I confirmed dim4 to be 6 after converting the dicoms myself with dcm2niix. The conversion is done when removing the s.dim4 criterion though…
I am running version 0.8.0, and tried it using both PIP install and singularity.
Looking forward to see if someone knows a solution to these issues!