I have run Heudiconv before, and particularly the same setup in the same environment. The only thing that seems to have changed is that Heudiconv is telling me that there is an updated version. For clarity, I run this via a Singularity container by submitting a job to a cluster via slurm as the WLM.
All of my logs from slurm output tell me:
INFO: Running heudiconv version 0.8.0 latest 0.9.0
INFO: Need to process 0 study sessions
Is the logging that a newer version exists supposed to lead to this?
Here is the command if it helps:
sbatch -n 1 --mem=5000 --time=1:30:0 --cpus-per-task=2 --job-name=“convert_sub-204015” --output=/bgfs/adombrovski/DNPL_DataMesh/Data/EXP/logs/DCM2BIDS_logs/Output-convert_sub-204015-jobid-%j.out --wrap=“singularity run --cleanenv -B /bgfs/adombrovski/DNPL_DataMesh/Data /bgfs/adombrovski/DNPL_DataMesh/Code/Singularity/heudiconv_latest.sif -d /bgfs/adombrovski/DNPL_DataMesh/Data/EXP/data_DICOMs/{subject}// -s 204015 -o /bgfs/adombrovski/DNPL_DataMesh/Data/EXP/data_BIDS -f /bgfs/adombrovski/DNPL_DataMesh/Data/EXP/heuristic.py -b -c dcm2niix”
Thanks in advance for any help on this!