I’m trying to run the new version of fmriprep on my sub-millimiter anatomical data, but I want to disable the hires reconstruction. I’m running the following command:
singularity run -B /nfs/k_lab
/nfs/k_lab/data/SB-ref/anat_nosubmm/sourcedata /nfs/k_lab/data/SB-ref/anat_nosubmm/derivatives participant
–participant-label sub-$SJ_NR --output-space T1w template fsaverage6
–nthreads 15 --omp-nthreads 15 --low-mem --fs-license-file /home/inesv/freesurfer/license.txt
–no-submm-recon --anat-only -w /scratch
However my processed data still comes out with 0.64x0.64x0.64mm…
Not sure why this is happening, has anyone experienced the same with this new version?