I see that fsl has this option through terminal_output, but I cant find that option for spm. I am talking more specifically for the foll.
spm.ApplyTransform()
spm.NewSegment()
spm.Smooth()
I am running vbm pipeline in my code and the foll. message is printed to stdout and I would like to supress this.
Workflow vbm_preprocess settings: [‘check’, ‘execution’, ‘logging’, ‘monitoring’]
180716-09:43:14,868 nipype.workflow INFO:
Running serially.
180716-09:43:14,868 nipype.workflow INFO:
[Node] Setting-up “vbm_preprocess.reorient” in “/tmp/tmpxm9sbyx9/vbm_preprocess/reorient”.
180716-09:43:14,879 nipype.workflow INFO:
[Node] Running “reorient” (“nipype.interfaces.spm.utils.ApplyTransform”)
180716-09:43:26,137 nipype.workflow INFO:
[Node] Finished “vbm_preprocess.reorient”.
180716-09:43:26,138 nipype.workflow INFO:
[Node] Setting-up “vbm_preprocess.segmentation” in “/tmp/tmp0nhcsuqn/vbm_preprocess/segmentation”.
180716-09:43:26,142 nipype.workflow INFO:
[Node] Running “segmentation” (“nipype.interfaces.spm.preprocess.NewSegment”)
180716-09:47:11,514 nipype.workflow INFO:
[Node] Finished “vbm_preprocess.segmentation”.
180716-09:47:11,514 nipype.workflow INFO:
[Node] Setting-up “vbm_preprocess.List_normalized_images” in “/tmp/tmp4eob8udy/vbm_preprocess/List_normalized_images”.
180716-09:47:11,518 nipype.workflow INFO:
[Node] Running “List_normalized_images” (“nipype.interfaces.utility.wrappers.Function”)
180716-09:47:11,521 nipype.workflow INFO:
[Node] Finished “vbm_preprocess.List_normalized_images”.
180716-09:47:11,521 nipype.workflow INFO:
[Node] Setting-up “vbm_preprocess.smoothing” in “/tmp/tmpmcne5j83/vbm_preprocess/smoothing”.
180716-09:47:11,526 nipype.workflow INFO:
[Node] Running “smoothing” (“nipype.interfaces.spm.preprocess.Smooth”)
180716-09:47:26,175 nipype.workflow INFO:
[Node] Finished “vbm_preprocess.smoothing”.
180716-09:47:26,176 nipype.workflow INFO:
[Node] Setting-up “vbm_preprocess.sinker” in “/tmp/tmp80mqycab/vbm_preprocess/sinker”.
180716-09:47:26,183 nipype.workflow INFO:
[Node] Running “sinker” (“nipype.interfaces.io.DataSink”)
180716-09:47:26,189 nipype.workflow INFO:
[Node] Finished “vbm_preprocess.sinker”.